Non-Coding RNA Search

Ss1.1-rpldo0139_g21.5

Sequence:


               
               GGGCGCGGCGCAGTGTATCCTGGGTCGGTGTAGCCATGGCGGCTCGTGTCCTCTGCGCCT
GTGTCCGCCGCCTGCCCGCGGCCTTTGCACCGCTGCCCAGGATTCCCACGGTGGTCGCAG
CTCGGCCGCTCAGCACCACCCTGTTCCCCACGGGAGCCCAGGCGAGGTCTAGGGCCCTGC
AGCCGGCCTTGGTGCTCGCGCAGGCTCCCGGCGGAGTCACACAGCTGTGTCGCCGGTATA
GTGACGCGCCCCCTCTGACATTAGAGGCGATCAAGGACCGTGTCCTTTACGTCTTGAAAC
TCTATGACAAGATCGATCCCGAAAAGCTCTCAGTAAATTCCCACTTTATGAAAGACCTGG
GCTTAGACAGTTTGGACCAAGTGGAGATTATCATGGCCATGGAGGACGAATTTGGGTTTG
AAATTCCTGATATAGATGCGGAGAAGTTAATGTGCCCACAAGAAATTGTAGATTACATTG
CAGATAAGAAGGATGTCTATGAATAAAGTATCAGACCCCTTTTCTTCACTGAAGAAAACT
CAGAAGATGCTGGCAGGTGTCTGGAAGTGAGAACACATTCTGCATCACTGCTCCCTGGGA
CAGAGTAATTCTGTTTAGACTGTATTTAAATTGTCTTAAGTGTTTTTGCCCTTTGAAAAT
AAATCTATTAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGCGGCGCAGTGTATCCTGGGTCGGTGTAGCCATGGCGGCTCGTGTCCTCTGCGCCT
GTGTCCGCCGCCTGCCCGCGGCCTTTGCACCGCTGCCCAGGATTCCCACGGTGGTCGCAG
CTCGGCCGCTCAGCACCACCCTGTTCCCCACGGGAGCCCAGGCGAGGTCTAGGGCCCTGC
AGCCGGCCTTGGTGCTCGCGCAGGCTCCCGGCGGAGTCACACAGCTGTGTCGCCGGTATA
GTGACGCGCCCCCTCTGACATTAGAGGCGATCAAGGACCGTGTCCTTTACGTCTTGAAAC
TCTATGACAAGATCGATCCCGAAAAGCTCTCAGTAAATTCCCACTTTATGAAAGACCTGG
GCTTAGACAGTTTGGACCAAGTGGAGATTATCATGGCCATGGAGGACGAATTTGGGTTTG
AAATTCCTGATATAGATGCGGAGAAGTTAATGTGCCCACAAGAAATTGTAGATTACATTG
CAGATAAGAAGGATGTCTATGAATAAAGTATCAGACCCCTTTTCTTCACTGAAGAAAACT
CAGAAGATGCTGGCAGGTGTCTGGAAGTGAGAACACATTCTGCATCACTGCTCCCTGGGA
CAGAGTAATTCTGTTTAGACTGTATTTAAATTGTCTTAAGTGTTTTTGCCCTTTGAAAAT
AAATCTATTAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|739|emb|CAA43970.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|739|emb|CAA43970.1|

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               203-458, gnl|bosTau2|chr16 (47012935-47012703)
               

               
               203-458, gnl|Mm7|chr7 (76379405-76379649)
               


               
               465-709, gnl|bosTau2|chr27 (29470495-29470729)
               

               
               465-709, gnl|Mm7|chr7 (136073513-136073304)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-458, gnl|bosTau2|chr16 (47012935-47012703)
               

               
               203-458, gnl|Mm7|chr7 (76379405-76379649)
               


               
               465-709, gnl|bosTau2|chr27 (29470495-29470729)
               

               
               465-709, gnl|Mm7|chr7 (136073513-136073304)

Expressed library(ies): 73 entry(ies)

More info

Expressed library(ies): 73 entry(ies)

Help | Less info


               
               hea (2.65849)
               

               
               che (2.58997)
               

               
               isp (2.40601)
               

               
               cbe (2.39234)
               

               
               nms (1.92472)
               

               
               cje (1.81758)
               

               
               ste (1.75771)
               

               
               bfe (1.64843)
               

               
               ldo (1.55204)
               

               
               ssp (1.49072)
               

               
               vin (1.33023)
               

               
               hlv (1.11405)
               

               
               spc (0.906927)
               

               
               mas (0.84122)
               

               
               cst (0.840218)
               

               
               cki (0.826173)
               

               
               sto (0.719295)
               

               
               rec (0.692281)
               

               
               sme (0.610874)
               

               
               pgl (0.592417)
               

               
               csk (0.562984)
               

               
               cut (0.509771)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               csp (0.322373)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 73 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (2.65849)
               

               
               che (2.58997)
               

               
               isp (2.40601)
               

               
               cbe (2.39234)
               

               
               nms (1.92472)
               

               
               cje (1.81758)
               

               
               ste (1.75771)
               

               
               bfe (1.64843)
               

               
               ldo (1.55204)
               

               
               ssp (1.49072)
               

               
               vin (1.33023)
               

               
               hlv (1.11405)
               

               
               spc (0.906927)
               

               
               mas (0.84122)
               

               
               cst (0.840218)
               

               
               cki (0.826173)
               

               
               sto (0.719295)
               

               
               rec (0.692281)
               

               
               sme (0.610874)
               

               
               pgl (0.592417)
               

               
               csk (0.562984)
               

               
               cut (0.509771)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               csp (0.322373)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	203-458, gnl\|bosTau2\|chr16 (47012935-47012703)
	203-458, gnl\|Mm7\|chr7 (76379405-76379649)

	465-709, gnl\|bosTau2\|chr27 (29470495-29470729)
	465-709, gnl\|Mm7\|chr7 (136073513-136073304)

	hea (2.65849)
	che (2.58997)
	isp (2.40601)
	cbe (2.39234)
	nms (1.92472)
	cje (1.81758)
	ste (1.75771)
	bfe (1.64843)
	ldo (1.55204)
	ssp (1.49072)
	vin (1.33023)
	hlv (1.11405)
	spc (0.906927)
	mas (0.84122)
	cst (0.840218)
	cki (0.826173)
	sto (0.719295)
	rec (0.692281)
	sme (0.610874)
	pgl (0.592417)
	csk (0.562984)
	cut (0.509771)
	ese (0.506009)
	fco (0.471624)
	amn (0.417711)
	lyg (0.399308)
	nlu (0.383362)
	bla (0.373042)
	cmu (0.372787)
	sag (0.36543)
	ebs (0.354904)
	sin (0.349895)
	csp (0.322373)
	lun (0.300978)
	fat (0.294855)
	cte (0.29274)
	hyp (0.285673)
	cga (0.279096)
	nca (0.273748)
	fce (0.271592)
	nmm (0.265604)
	ute (0.265569)
	kid (0.259471)
	ova (0.258264)
	sug (0.254582)
	thg (0.253582)
	cly (0.241284)
	eru (0.240096)
	ecc (0.23007)
	jca (0.22792)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	liv (0.146284)
	lnt (0.142308)
	cov (0.132153)
	cbr (0.127975)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)