Non-Coding RNA Search

Ss1.1-rpldo0139_j12.5

Sequence:


               
               CCACGCGTCCGCCCACGCGTCCGATCTGGGACCCCATATCAGGCTCTGGAGACGCTGCTA
CCTGAGGGGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAATCGCTGGCCTCCA
GGATGAGCTATCCCATCTTCAGGAGTTATTAAGGAAATGGACACCAAGAATATCTCCTGA
GGATCACTCCAAGAAAAGAGATCCAAATACCATTCTTTCCCAATCCCACTGAAATTGCTG
GCTCTCTCATGGGCGGGGCAGAGAGTGGTCTGGGGTGAGGGAGAATTCTGTCTAATCCTT
CAAATCTTATCTGGTTTTACTCCCTCAGCTTTCATATGCCAGCCTTTAAACAAGCTCACT
GACTTGAGTTTCCATAGCTGATAGGTGGCTAACCTTATCCAACTCTTACCCTATCCTTCT
TGGTTTAAATAGTTTCTTGTGACCTGAAGAATTAAAGAAACAAAACCAACAAAACCAATC
CGGAATATGATTGCCCTTTTTTCATGCATTCCAACCCTTTTGGATGGAAATTTTGGATAC
TGAGCTGGTAAATTGTGAGGTCAGAGAAACAATTTGTCAGTGCCAACAAGATGGCCTACA
GACCTCCTTCTCACCTCCCCCTGCTGCTCCTTTGATTCCAATTTCTATTTCTTCCCTTAA
AGTTTTCTCTGGGTGTGGTGTGGCTATGGGAGACACCCAGTCTTTTCCAATTGTATATTT
TTGTAACGGCATTTCTATTTAAGGAGTTCATTAAATCACAGTATTTATACACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGCCCACGCGTCCGATCTGGGACCCCATATCAGGCTCTGGAGACGCTGCTA
CCTGAGGGGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAATCGCTGGCCTCCA
GGATGAGCTATCCCATCTTCAGGAGTTATTAAGGAAATGGACACCAAGAATATCTCCTGA
GGATCACTCCAAGAAAAGAGATCCAAATACCATTCTTTCCCAATCCCACTGAAATTGCTG
GCTCTCTCATGGGCGGGGCAGAGAGTGGTCTGGGGTGAGGGAGAATTCTGTCTAATCCTT
CAAATCTTATCTGGTTTTACTCCCTCAGCTTTCATATGCCAGCCTTTAAACAAGCTCACT
GACTTGAGTTTCCATAGCTGATAGGTGGCTAACCTTATCCAACTCTTACCCTATCCTTCT
TGGTTTAAATAGTTTCTTGTGACCTGAAGAATTAAAGAAACAAAACCAACAAAACCAATC
CGGAATATGATTGCCCTTTTTTCATGCATTCCAACCCTTTTGGATGGAAATTTTGGATAC
TGAGCTGGTAAATTGTGAGGTCAGAGAAACAATTTGTCAGTGCCAACAAGATGGCCTACA
GACCTCCTTCTCACCTCCCCCTGCTGCTCCTTTGATTCCAATTTCTATTTCTTCCCTTAA
AGTTTTCTCTGGGTGTGGTGTGGCTATGGGAGACACCCAGTCTTTTCCAATTGTATATTT
TTGTAACGGCATTTCTATTTAAGGAGTTCATTAAATCACAGTATTTATACACAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-288, + strand, RNAz p=0.966536

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-288, + strand, RNAz p=0.966536

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006697, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006697, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               33-331, gnl|bosTau2|chr2 (39984558-39984254)
               

               
               33-331, gnl|Hg17|chr1 (146714640-146714034)
               


               
               468-773, gnl|bosTau2|chr2 (39984196-39983889)
               

               
               468-773, gnl|Hg17|chr1 (146713902-146713620)
               

               
               468-773, gnl|Mm7|chr3 (96045394-96045664)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-331, gnl|bosTau2|chr2 (39984558-39984254)
               

               
               33-331, gnl|Hg17|chr1 (146714640-146714034)
               


               
               468-773, gnl|bosTau2|chr2 (39984196-39983889)
               

               
               468-773, gnl|Hg17|chr1 (146713902-146713620)
               

               
               468-773, gnl|Mm7|chr3 (96045394-96045664)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               lin (0.436808)
               

               
               duo (0.345602)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               duo (0.345602)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	33-331, gnl\|bosTau2\|chr2 (39984558-39984254)
	33-331, gnl\|Hg17\|chr1 (146714640-146714034)

	468-773, gnl\|bosTau2\|chr2 (39984196-39983889)
	468-773, gnl\|Hg17\|chr1 (146713902-146713620)
	468-773, gnl\|Mm7\|chr3 (96045394-96045664)

	lin (0.436808)
	duo (0.345602)
	ret (0.257467)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	ova (0.129132)
	jca (0.11396)
	ldo (0.0970026)