Non-Coding RNA Search

Ss1.1-rpldo0139_p15.5

Sequence:


               
               GGATTGTCTGCCTAGGCGTTGGGCTCGGACGGCAGCCGAGTGGAGGAAGTGTGGGCCTGG
CTGGTCACAGGAAGCTTGTATGGCCTGCATGGATGGTCAGCCTGCCCTGAGTGGACACCT
TAGTGGTCCTGGGACCCATCTCAGAGCAGAGAGCAGAGGCAGTGCCCCCAGGGACCCATC
CTTCAAGGTGGCCATATAAGGTAGTAGGAATGACCACACTGACGAGGAGTTCCTAGCAAG
GCTTTTCTGCAGGTAGCACAGGAGAACTCTGCCTGTGGCCAAGACTCTGTGGTCCAGAGG
GAGCTCATGAGGCTGGGTTTACACTGGCAAAGCAGAGATTCATTACAGGGATTTGGACTT
TTACATCATACTGTATAATGTGGAGAAATTGTACAAACATCTATTTTTATACTATTGGGC
TAAAATAGACAGGATTGTGAAAGTGTTGATGGTAAGTTAAAACAAGTAGTTTTTGTGACT
AAGAAGAAAAAAATGCATATATTCACATGTTTCTACATGATTCAACAACTCTTTGGTCTA
GCCCAGTGCTATCCAGTAGAGCTTTCTGCAGTAATGGGAATGTTTTATATCTATGCTGTC
CAATTTAGTAACCACCAGATTCACGTGCTTCTTGAGCCCTTGGACAAGGTCTGGTGTAAC
TGAAGAACTAAATTTTCAATTACATTTAAATTTAAATAGGCAAAGGTAGTTACCATATTG
GACAGTACAGGTCTAGCCAATTGAGTTTTTTGGAAGTTAATCTGAGCTAGAAATGAAGGG
TAATTTTTATTTTCTTATCCTAGAATGGTTAATAATGATACCCTAATATTGTCTTGATAG
GCTTAATCATAATTCTAAATATTTATCCTCAACAGACATAAAACAGAATATTCTAAAGCT
ACATGGTAATGCTTCAGTAGAGCACTGCTTCAACTTAAAAACAAACTCTAAGAAGTAGGT
TAAGAGATGAAATGAGTAGGAAAATGAGAAGTCACTTTAATTGAGCCTCAAACAATTTTC
ATATTTGCATTTAAAAATATAATTCAAATTTATTAGTCATAATAGTGAATGATCTTGGAA
TTTTATTTCATGCCAGGTATATGTTATTGTTATTATTTTTTTGTCTTTTTAGGGCAGCAT
CCGCAGCATATGGAAGTTCCCAGGCTAGGGTTTGAATCAGAGCTGCAGCTGTTGGCACAT
GCCATAGCCACAGCAACGCCAGATCCAAGCGGCACCTGTGACCTATACCACCGCTTGCAG
CAGTGCTGGATCCTTAATCCATTGAGCTGCAATGGGAACTCCCCAAGATATGTTATATAC
AGCCAGATGTAAAAATACATCTGAAAAGGGGGACAATGGGACTTTCACATAAATTGACAG
TCCATAACTCGTGTAAAATTTATTTCAATAAAATCAGTTTTTTGTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTGTCTGCCTAGGCGTTGGGCTCGGACGGCAGCCGAGTGGAGGAAGTGTGGGCCTGG
CTGGTCACAGGAAGCTTGTATGGCCTGCATGGATGGTCAGCCTGCCCTGAGTGGACACCT
TAGTGGTCCTGGGACCCATCTCAGAGCAGAGAGCAGAGGCAGTGCCCCCAGGGACCCATC
CTTCAAGGTGGCCATATAAGGTAGTAGGAATGACCACACTGACGAGGAGTTCCTAGCAAG
GCTTTTCTGCAGGTAGCACAGGAGAACTCTGCCTGTGGCCAAGACTCTGTGGTCCAGAGG
GAGCTCATGAGGCTGGGTTTACACTGGCAAAGCAGAGATTCATTACAGGGATTTGGACTT
TTACATCATACTGTATAATGTGGAGAAATTGTACAAACATCTATTTTTATACTATTGGGC
TAAAATAGACAGGATTGTGAAAGTGTTGATGGTAAGTTAAAACAAGTAGTTTTTGTGACT
AAGAAGAAAAAAATGCATATATTCACATGTTTCTACATGATTCAACAACTCTTTGGTCTA
GCCCAGTGCTATCCAGTAGAGCTTTCTGCAGTAATGGGAATGTTTTATATCTATGCTGTC
CAATTTAGTAACCACCAGATTCACGTGCTTCTTGAGCCCTTGGACAAGGTCTGGTGTAAC
TGAAGAACTAAATTTTCAATTACATTTAAATTTAAATAGGCAAAGGTAGTTACCATATTG
GACAGTACAGGTCTAGCCAATTGAGTTTTTTGGAAGTTAATCTGAGCTAGAAATGAAGGG
TAATTTTTATTTTCTTATCCTAGAATGGTTAATAATGATACCCTAATATTGTCTTGATAG
GCTTAATCATAATTCTAAATATTTATCCTCAACAGACATAAAACAGAATATTCTAAAGCT
ACATGGTAATGCTTCAGTAGAGCACTGCTTCAACTTAAAAACAAACTCTAAGAAGTAGGT
TAAGAGATGAAATGAGTAGGAAAATGAGAAGTCACTTTAATTGAGCCTCAAACAATTTTC
ATATTTGCATTTAAAAATATAATTCAAATTTATTAGTCATAATAGTGAATGATCTTGGAA
TTTTATTTCATGCCAGGTATATGTTATTGTTATTATTTTTTTGTCTTTTTAGGGCAGCAT
CCGCAGCATATGGAAGTTCCCAGGCTAGGGTTTGAATCAGAGCTGCAGCTGTTGGCACAT
GCCATAGCCACAGCAACGCCAGATCCAAGCGGCACCTGTGACCTATACCACCGCTTGCAG
CAGTGCTGGATCCTTAATCCATTGAGCTGCAATGGGAACTCCCCAAGATATGTTATATAC
AGCCAGATGTAAAAATACATCTGAAAAGGGGGACAATGGGACTTTCACATAAATTGACAG
TCCATAACTCGTGTAAAATTTATTTCAATAAAATCAGTTTTTTGTGCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               758-981, gnl|bosTau2|chr22 (42686243-42686011)
               

               
               758-981, gnl|Hg17|chr3 (46532993-46532693)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               758-981, gnl|bosTau2|chr22 (42686243-42686011)
               

               
               758-981, gnl|Hg17|chr3 (46532993-46532693)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               isp (1.65414)
               

               
               ste (0.811249)
               

               
               bfe (0.449573)
               

               
               hea (0.408998)
               

               
               ldo (0.38801)
               

               
               sme (0.305437)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.65414)
               

               
               ste (0.811249)
               

               
               bfe (0.449573)
               

               
               hea (0.408998)
               

               
               ldo (0.38801)
               

               
               sme (0.305437)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

	758-981, gnl\|bosTau2\|chr22 (42686243-42686011)
	758-981, gnl\|Hg17\|chr3 (46532993-46532693)

	isp (1.65414)
	ste (0.811249)
	bfe (0.449573)
	hea (0.408998)
	ldo (0.38801)
	sme (0.305437)
	tbr (0.154178)
	ctl (0.153069)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ret (0.128733)