Non-Coding RNA Search

Ss1.1-rpldo0139_p24.5

Sequence:


               
               CATTTGTGAAGAAGAGCCATCTCTAGAGGCATTAGTAGAAAAGCACAAAAGGGATGATCC
TTGGAGTTCCAACTTCTTAGAAACTTGGGAATCTGAAGGCAGTCTAGAAAGGCAGCAGGC
AAATGAACAGACACTGTCACAGGAAATAAAAATAACAGAAAAGACAATACCTACTTTGGA
GAAAGACCATGTAAATAATGACTTTGAAAAAAGCATCAATAAGAGTTCAGACCTTTCAAC
ACAAAAAGAAATATCTCCAGAAGAGACCTCTACTAAAACGAGTGTCAAACAGAATTTAAA
CCGCGTTAAAAAAGAGAAATTGTGTAAGTGCAATGAATGTGGGAAAGCTTTTAGTTATTG
TTCAGCTCTTATCCGCCACCAGAGAACACATACTGGAGAAAAACCCTACAAATGCAATGA
ATGTGAAAAAGCCTTCAGCCGGAGCGAAAACCTTATTAGCCATCAAAGAATTCATACTGG
AGATAAACCATACAAATGTGATCAGTGTGGAAAAGGCTTCATTGAGGGTCCATCTCTTAC
TCAACATCAAAGAATTCACACTGGAGAAAAACCTTATAAATGTGATGAATGTGGGAAAGC
CTTTAGTCAGAGGACCCATCTTGTTCAGCATCAGAGAATTCACACTGGTGAGAAACCATA
TACTTGTAATGAGTGTGGAAAGGCCTTTAGCCAGAGAGGCCACTTTATGGAACATTAGAA
AATTCATACAGGAGAAAAACCTTTTAAATGTGATGAATGTGATAAAACCTTTACCAGGAG
CACACACCTTACTCAACATCAAAAAATTCATACTGGAGAGAAAACCTATAAATGTAACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTGTGAAGAAGAGCCATCTCTAGAGGCATTAGTAGAAAAGCACAAAAGGGATGATCC
TTGGAGTTCCAACTTCTTAGAAACTTGGGAATCTGAAGGCAGTCTAGAAAGGCAGCAGGC
AAATGAACAGACACTGTCACAGGAAATAAAAATAACAGAAAAGACAATACCTACTTTGGA
GAAAGACCATGTAAATAATGACTTTGAAAAAAGCATCAATAAGAGTTCAGACCTTTCAAC
ACAAAAAGAAATATCTCCAGAAGAGACCTCTACTAAAACGAGTGTCAAACAGAATTTAAA
CCGCGTTAAAAAAGAGAAATTGTGTAAGTGCAATGAATGTGGGAAAGCTTTTAGTTATTG
TTCAGCTCTTATCCGCCACCAGAGAACACATACTGGAGAAAAACCCTACAAATGCAATGA
ATGTGAAAAAGCCTTCAGCCGGAGCGAAAACCTTATTAGCCATCAAAGAATTCATACTGG
AGATAAACCATACAAATGTGATCAGTGTGGAAAAGGCTTCATTGAGGGTCCATCTCTTAC
TCAACATCAAAGAATTCACACTGGAGAAAAACCTTATAAATGTGATGAATGTGGGAAAGC
CTTTAGTCAGAGGACCCATCTTGTTCAGCATCAGAGAATTCACACTGGTGAGAAACCATA
TACTTGTAATGAGTGTGGAAAGGCCTTTAGCCAGAGAGGCCACTTTATGGAACATTAGAA
AATTCATACAGGAGAAAAACCTTTTAAATGTGATGAATGTGATAAAACCTTTACCAGGAG
CACACACCTTACTCAACATCAAAAAATTCATACTGGAGAGAAAACCTATAAATGTAACGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809211|ref|XP_593739.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809211|ref|XP_593739.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               313-840, gnl|bosTau2|chr10 (8996763-8996236)
               

               
               313-840, gnl|Hg17|chr19 (42818568-42817957)
               

               
               313-840, gnl|Mm7|chr2 (127310194-127309672)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               313-840, gnl|bosTau2|chr10 (8996763-8996236)
               

               
               313-840, gnl|Hg17|chr19 (42818568-42817957)
               

               
               313-840, gnl|Mm7|chr2 (127310194-127309672)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	313-840, gnl\|bosTau2\|chr10 (8996763-8996236)
	313-840, gnl\|Hg17\|chr19 (42818568-42817957)
	313-840, gnl\|Mm7\|chr2 (127310194-127309672)