Non-Coding RNA Search

Ss1.1-rpldo0140_f17.5

Sequence:


               
               ATTGAGGTGCACGTGGAGAAAGGTATGAAAGATGGGCAAAAGATACTGTTTCATGGAGAA
GGAGATCAGGAGCCTGAGCTGGAGCCTGGTGATGTCATAATTGTGCTTGATCAGAAGGAT
CATAGTGTCTTTCAGAGACGAGGCCATGACTTGATCATGAAAATGAAAATTCAGCTTTGT
GAAGCCCTGTGTGGCTTCAAGAAGACGATAAAAACACTGGATGATCGAGTCCTTGTTATT
ACATCCAAATCAGGTGAGGTGATAAAGCACGGGGACCTGAAATGTGTGCGTAATGAAGGA
ATGCCCATCTACAAAGCACCCCTGGAGAAAGGGACTCTGATCATACAGTTTTTAGTTATT
TTTCCTGAAAAACACTGGCTTCCTCAAGACAAGCTTCCCCAGCTGGAAGCTCTGCTCCCT
CCTCGACAGAAAGTCAGGATAACGGACGACATGGATCAGGTGGAGCTGAAGGAGTTTAAT
CCCAATGAGCAGAACTGGCGCCAGCACAGGGAGGCCTACGAGGAGGACGATGACGGGCCC
CGGGCCGGCGTGCAGTGCCAGACGGCATGAGGGGGCCCCGGAGCAGCATGGCCCAGCTGG
ACTAGCACTGATGAATGTAAAGTTGGCACAATGAAAATGGCATCGCTTTAATGGCCTCGT
GTTTGGGGTGTCCTGTGTATGTGTTCAGCATTCTCAACTGCTGAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGAGGTGCACGTGGAGAAAGGTATGAAAGATGGGCAAAAGATACTGTTTCATGGAGAA
GGAGATCAGGAGCCTGAGCTGGAGCCTGGTGATGTCATAATTGTGCTTGATCAGAAGGAT
CATAGTGTCTTTCAGAGACGAGGCCATGACTTGATCATGAAAATGAAAATTCAGCTTTGT
GAAGCCCTGTGTGGCTTCAAGAAGACGATAAAAACACTGGATGATCGAGTCCTTGTTATT
ACATCCAAATCAGGTGAGGTGATAAAGCACGGGGACCTGAAATGTGTGCGTAATGAAGGA
ATGCCCATCTACAAAGCACCCCTGGAGAAAGGGACTCTGATCATACAGTTTTTAGTTATT
TTTCCTGAAAAACACTGGCTTCCTCAAGACAAGCTTCCCCAGCTGGAAGCTCTGCTCCCT
CCTCGACAGAAAGTCAGGATAACGGACGACATGGATCAGGTGGAGCTGAAGGAGTTTAAT
CCCAATGAGCAGAACTGGCGCCAGCACAGGGAGGCCTACGAGGAGGACGATGACGGGCCC
CGGGCCGGCGTGCAGTGCCAGACGGCATGAGGGGGCCCCGGAGCAGCATGGCCCAGCTGG
ACTAGCACTGATGAATGTAAAGTTGGCACAATGAAAATGGCATCGCTTTAATGGCCTCGT
GTTTGGGGTGTCCTGTGTATGTGTTCAGCATTCTCAACTGCTGAGTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33338014|gb|AAQ13629.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33338014|gb|AAQ13629.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               428-544, - strand, RNAz p=0.942334

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-544, - strand, RNAz p=0.942334

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-563, gnl|bosTau2|chr15 (8817842-8818404)
               

               
               4-563, gnl|Hg17|chrX (106401585-106401032)
               

               
               4-563, gnl|Mm7|chr4 (40866628-40871402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-563, gnl|bosTau2|chr15 (8817842-8818404)
               

               
               4-563, gnl|Hg17|chrX (106401585-106401032)
               

               
               4-563, gnl|Mm7|chr4 (40866628-40871402)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	4-563, gnl\|bosTau2\|chr15 (8817842-8818404)
	4-563, gnl\|Hg17\|chrX (106401585-106401032)
	4-563, gnl\|Mm7\|chr4 (40866628-40871402)

	tes (0.207814)
	hea (0.204499)
	ste (0.135208)
	clu (0.119646)
	ldo (0.0970026)