Non-Coding RNA Search

Ss1.1-rpldo0140_g22.5

Sequence:


               
               CAACCAACCAACCACAAGCCACCCTAAAATGACAGCCACTGATGTCTGGGCATCGGCCTC
TGTACTCTGTTTTTTTAAGAAAGTGCAAAATCAACTTGAAGCAAGCTTTCTCTCATAATG
TAATGATTATGTGACAATCCCGAAGAAACCACAGGTTCCGTAGAACTCATATCCTTTCTC
TCTCTTTTTTTTCTTCTTTTTTCCCCCCCTTTTCCTTTTGCCATGGAATCTGGGTGGGAG
AGGATACTGCCGGCACCGGAATGCTAAACTTTCCTAACATTTTGAAGTTTCTGTAGTTCG
TCCTTTCTCCTGACACCCATGTAAATGTCCAAAATGTTGATCTTCCACTGCAAATTTCAA
AAGCCTTGTCAATGGTCAAGCGTGCAGCTTGTTCAGCGGTTCTTTCTGAGGAGCGAGCGC
GGTGTTACATGATAATGAGAGTTGGGTAGAACTCTCTGGGATGTGTTCAGCTAGTGTAAT
TGCTACATTCTCCGATGTAGTTAAGTATTTACAGATGTTAAATGGAGTATTTTTATTTTG
TGTACATACGATACAATGATGTTCTTTTTTTGTTACAGCTATGCACTGTAAATGCAGCCT
TCTTTTCAAAACTGCTAAATTTTTCTTAATCAAGAATATTCAAATGTAATTATGAGGTGA
AACAACTATTGTACACTAACATATTTAGAAGCTGAACTTACCGCTTATATATATATTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCAACCAACCACAAGCCACCCTAAAATGACAGCCACTGATGTCTGGGCATCGGCCTC
TGTACTCTGTTTTTTTAAGAAAGTGCAAAATCAACTTGAAGCAAGCTTTCTCTCATAATG
TAATGATTATGTGACAATCCCGAAGAAACCACAGGTTCCGTAGAACTCATATCCTTTCTC
TCTCTTTTTTTTCTTCTTTTTTCCCCCCCTTTTCCTTTTGCCATGGAATCTGGGTGGGAG
AGGATACTGCCGGCACCGGAATGCTAAACTTTCCTAACATTTTGAAGTTTCTGTAGTTCG
TCCTTTCTCCTGACACCCATGTAAATGTCCAAAATGTTGATCTTCCACTGCAAATTTCAA
AAGCCTTGTCAATGGTCAAGCGTGCAGCTTGTTCAGCGGTTCTTTCTGAGGAGCGAGCGC
GGTGTTACATGATAATGAGAGTTGGGTAGAACTCTCTGGGATGTGTTCAGCTAGTGTAAT
TGCTACATTCTCCGATGTAGTTAAGTATTTACAGATGTTAAATGGAGTATTTTTATTTTG
TGTACATACGATACAATGATGTTCTTTTTTTGTTACAGCTATGCACTGTAAATGCAGCCT
TCTTTTCAAAACTGCTAAATTTTTCTTAATCAAGAATATTCAAATGTAATTATGAGGTGA
AACAACTATTGTACACTAACATATTTAGAAGCTGAACTTACCGCTTATATATATATTTGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               216-333, - strand, RNAz p=0.84602
               

               
               413-531, - strand, RNAz p=0.523043

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-333, - strand, RNAz p=0.84602
               

               
               413-531, - strand, RNAz p=0.523043

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               285-399, + strand, RNAmicro p=0.999901

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               285-399, + strand, RNAmicro p=0.999901

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-714, gnl|bosTau2|chr6 (20939450-20938725)
               

               
               2-714, gnl|Hg17|chr4 (23473162-23472430)
               

               
               2-714, gnl|Mm7|chr5 (50830784-50830035)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-714, gnl|bosTau2|chr6 (20939450-20938725)
               

               
               2-714, gnl|Hg17|chr4 (23473162-23472430)
               

               
               2-714, gnl|Mm7|chr5 (50830784-50830035)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.997672)
               

               
               isp (0.601504)
               

               
               cmu (0.186393)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               isp (0.601504)
               

               
               cmu (0.186393)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	216-333, - strand, RNAz p=0.84602
	413-531, - strand, RNAz p=0.523043

	2-714, gnl\|bosTau2\|chr6 (20939450-20938725)
	2-714, gnl\|Hg17\|chr4 (23473162-23472430)
	2-714, gnl\|Mm7\|chr5 (50830784-50830035)

	vin (0.997672)
	isp (0.601504)
	cmu (0.186393)
	hlv (0.139256)
	kid (0.129735)
	jej (0.0989218)
	ldo (0.0970026)