Non-Coding RNA Search

Ss1.1-rpliv0101_d3.5

Sequence:


               
               ACTTCAGAGCAAAACATCATTGTAATTCTTGCTGTAGAAAGCTTAAACTTCCAGATCTGA
AGAGGAATGACTATACACCTGATAAAGTTATATTTCCTCAGGATGAACCTTCTGATTTGA
CTCTTCAGCCTGGAAATTCCACCAAAGAATCAGAATCAACTAATTCTGTTCGTCTGATGT
TATAATATTACTGAATCATTGGTTTTGCCTACACCTCACAAAAATGTTACTGTGTCACTT
TTCCTTTAAGAGGGAATTGTTTGGTAATATAAGTGTGTCCTAATTGAATATGCTGAATCT
GGCACAGTTGAAAGGTCAATATTCTTTTGACCTGATTAAACTAGTCAGAAACTCACTATA
GGATACAGCTGGCAGCTGTTAAATTTTAAAGGTAAAGAAAAATTCATATTTATAACTTTT
TAAAGGGCTCTTTTTAACAGAGGATTTCATTTGACTTTGTTCTGATGAGGGTAACACCCT
CACTTCATGTGGTGCAATACCATTAACCAAAGTTAGGTGTCCGTGCATATTTTATTGGCA
GCTGGTTTACTGCCATTCAGCTAGTGAGATAAAGAAATCACCCAGTCTTTTGGTTAAATG
GCAGTCAGACGTCTTCCTCAGTGTGTTTTAGTGTGTTCAGTGATGATGTCCCTAGTCCCC
AGCTAGATGCTTCTTGGCCGTGGGAAAGGAGATGGCTTGTTACAATTCTAGATCTACAGG
GATATAGGAAGCCCAAGGTGAAAAGCATTTTCCAAGGGGGACTTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCAGAGCAAAACATCATTGTAATTCTTGCTGTAGAAAGCTTAAACTTCCAGATCTGA
AGAGGAATGACTATACACCTGATAAAGTTATATTTCCTCAGGATGAACCTTCTGATTTGA
CTCTTCAGCCTGGAAATTCCACCAAAGAATCAGAATCAACTAATTCTGTTCGTCTGATGT
TATAATATTACTGAATCATTGGTTTTGCCTACACCTCACAAAAATGTTACTGTGTCACTT
TTCCTTTAAGAGGGAATTGTTTGGTAATATAAGTGTGTCCTAATTGAATATGCTGAATCT
GGCACAGTTGAAAGGTCAATATTCTTTTGACCTGATTAAACTAGTCAGAAACTCACTATA
GGATACAGCTGGCAGCTGTTAAATTTTAAAGGTAAAGAAAAATTCATATTTATAACTTTT
TAAAGGGCTCTTTTTAACAGAGGATTTCATTTGACTTTGTTCTGATGAGGGTAACACCCT
CACTTCATGTGGTGCAATACCATTAACCAAAGTTAGGTGTCCGTGCATATTTTATTGGCA
GCTGGTTTACTGCCATTCAGCTAGTGAGATAAAGAAATCACCCAGTCTTTTGGTTAAATG
GCAGTCAGACGTCTTCCTCAGTGTGTTTTAGTGTGTTCAGTGATGATGTCCCTAGTCCCC
AGCTAGATGCTTCTTGGCCGTGGGAAAGGAGATGGCTTGTTACAATTCTAGATCTACAGG
GATATAGGAAGCCCAAGGTGAAAAGCATTTTCCAAGGGGGACTTTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842305|ref|XP_581651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842305|ref|XP_581651.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               53-244, - strand, RNAz p=0.966083
               

               
               513-632, - strand, RNAz p=0.553849

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-244, - strand, RNAz p=0.966083
               

               
               513-632, - strand, RNAz p=0.553849

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-768, gnl|bosTau2|chr3 (16064123-16064832)
               

               
               53-768, gnl|Hg17|chr15 (48641299-48640573)
               

               
               53-768, gnl|Mm7|chr2 (126533811-126533098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-768, gnl|bosTau2|chr3 (16064123-16064832)
               

               
               53-768, gnl|Hg17|chr15 (48641299-48640573)
               

               
               53-768, gnl|Mm7|chr2 (126533811-126533098)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)

	53-244, - strand, RNAz p=0.966083
	513-632, - strand, RNAz p=0.553849

	53-768, gnl\|bosTau2\|chr3 (16064123-16064832)
	53-768, gnl\|Hg17\|chr15 (48641299-48640573)
	53-768, gnl\|Mm7\|chr2 (126533811-126533098)