Non-Coding RNA Search

Ss1.1-rpliv0101_n13.5

Sequence:


               
               GGCACAGATCAAGACCAAGATTTGGCCCTTTGTCTGTAATAAGTAGAGGAACTTGGTGTG
AGTTTTAACTTTTTTTTCCCCCAGCCATTAGTGTCTGGAGTTATCAATGGAAGAATTAGA
GAATTTAGGATTTCTTCCTTTGATTTGGTAAGGGAGATTTGGTTTGCTGGAATTATGGCT
CTAAATATGATAGTGTGATATGCACGTATGTTGGAGGATGAATGAACCACTCCTTGATAC
CTTTTTGTGACTGTCATTTCTGAAAGTTTACTGTGAAAGTTTAAAGTGAAACAAATTTAG
AATATAGTGCAATTGGCCATATTTGAGACCTTGGCATCTTATTTTTCTGGACCCCCAAAC
TAAATTATAGTTCTTGATAATATCACCCTCTGTTGCAGTGACAGTAGCCTTGTATCACAG
AACTGGTTTTGCCTAAAAGATGGGTAAGAAAATGAGAAAGATATATTTATCACCATCACA
GCAGTCTTCCGGATTGATTGCTTCTTGTTCTATGTATAGCTATAAATAGATTCCTATATA
TAGCCATAGTAGACTCCTAGGTAATTATATGGGATATAAGTTTGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACAGATCAAGACCAAGATTTGGCCCTTTGTCTGTAATAAGTAGAGGAACTTGGTGTG
AGTTTTAACTTTTTTTTCCCCCAGCCATTAGTGTCTGGAGTTATCAATGGAAGAATTAGA
GAATTTAGGATTTCTTCCTTTGATTTGGTAAGGGAGATTTGGTTTGCTGGAATTATGGCT
CTAAATATGATAGTGTGATATGCACGTATGTTGGAGGATGAATGAACCACTCCTTGATAC
CTTTTTGTGACTGTCATTTCTGAAAGTTTACTGTGAAAGTTTAAAGTGAAACAAATTTAG
AATATAGTGCAATTGGCCATATTTGAGACCTTGGCATCTTATTTTTCTGGACCCCCAAAC
TAAATTATAGTTCTTGATAATATCACCCTCTGTTGCAGTGACAGTAGCCTTGTATCACAG
AACTGGTTTTGCCTAAAAGATGGGTAAGAAAATGAGAAAGATATATTTATCACCATCACA
GCAGTCTTCCGGATTGATTGCTTCTTGTTCTATGTATAGCTATAAATAGATTCCTATATA
TAGCCATAGTAGACTCCTAGGTAATTATATGGGATATAAGTTTGATCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-113, + strand, RNAz p=0.873443

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, + strand, RNAz p=0.873443

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-588, gnl|bosTau2|chr29 (36843363-36843944)
               

               
               1-588, gnl|Hg17|chr11 (66190375-66189756)
               

               
               1-588, gnl|Mm7|chr19 (4659321-4660008)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr29 (36843363-36843944)
               

               
               1-588, gnl|Hg17|chr11 (66190375-66189756)
               

               
               1-588, gnl|Mm7|chr19 (4659321-4660008)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               nep (0.183925)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-588, gnl\|bosTau2\|chr29 (36843363-36843944)
	1-588, gnl\|Hg17\|chr11 (66190375-66189756)
	1-588, gnl\|Mm7\|chr19 (4659321-4660008)

	liv (0.292569)
	nep (0.183925)
	hyp (0.142837)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	cty (0.10408)