Non-Coding RNA Search

Ss1.1-rpliv0103_b23.5

Sequence:


               
               GGAATCGCCTCCTGGAGCCAGCCCGCACCCTTTTCTAAAGGCGTCTGTATGTAAACAGTC
AATAAAACAATCATTCTTAAGATGCCATCAAGATGGGTCTTCCTACCAATGAATGGGTCT
GAGGGTAAGAGTCCAGTTGTATGTATTTCCAAGCAAAACACTTAAGTGTTCTTGTTATGC
AATTGATGTTCAGTTTATGTGGTGTATGAAATTTGCTTAAAAGGGAATCTTCATGATTTG
AGTTGGTGTCTGTTTTAAAGGATATTTAAGTTTATTTTGAAAAGAAGGAAAAATGGATGA
ATATGTGAATTTTTTAAGCCCAAGAGACAAGATAGTCCCACACTTTTCCTGTAAAGAAAA
TCATATTCAAAATCTTTCATACATCCTGTAGAAAGTACTGATTTCCGCCCCCAATACCAC
ATATTATATTTGCACTACTATAATGTGAAGACTGAAAGTATAAAAAAAAGTACATGTAAG
GTTGATTTTTATATCCTTTTTTAAAAAGGGGGTTGAGTCTGTTGCACTAGGCTCTGCATG
ACTGTTTATGAGACCTGTTATGCTACATTTATAAGTCCCTAGTTTGGGTACTTCTGTCTT
TATGGGATCAACAGCATGTGATAAGCAATACAAAACACTAAGCCTTATAAGAAAAATTTT
AACAAATCGATTAAAGTACTAAACAGAGCAAATATATATGTGACAAAACTAGATTTAAGG
AAATGTGCATTATAATACAGGAGCTCAATAAGAAACTTTAGATCTAGGAAAACATGTATT
TGGGGAGAGAGTTTAGGGGCTTAAGAAGTTATATATTTTTTATTTAAAAATTAAATTATT
GTGTAATTTGGAAGAAGTTGCTTTGAATGTAGGACAAAATTATTTCAAAGATTTTTGTTT
GACAAAAACTAATGTATTTTTGTGCCTTAATATTTGTTCTGTCTTAATAAAATGCTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCGCCTCCTGGAGCCAGCCCGCACCCTTTTCTAAAGGCGTCTGTATGTAAACAGTC
AATAAAACAATCATTCTTAAGATGCCATCAAGATGGGTCTTCCTACCAATGAATGGGTCT
GAGGGTAAGAGTCCAGTTGTATGTATTTCCAAGCAAAACACTTAAGTGTTCTTGTTATGC
AATTGATGTTCAGTTTATGTGGTGTATGAAATTTGCTTAAAAGGGAATCTTCATGATTTG
AGTTGGTGTCTGTTTTAAAGGATATTTAAGTTTATTTTGAAAAGAAGGAAAAATGGATGA
ATATGTGAATTTTTTAAGCCCAAGAGACAAGATAGTCCCACACTTTTCCTGTAAAGAAAA
TCATATTCAAAATCTTTCATACATCCTGTAGAAAGTACTGATTTCCGCCCCCAATACCAC
ATATTATATTTGCACTACTATAATGTGAAGACTGAAAGTATAAAAAAAAGTACATGTAAG
GTTGATTTTTATATCCTTTTTTAAAAAGGGGGTTGAGTCTGTTGCACTAGGCTCTGCATG
ACTGTTTATGAGACCTGTTATGCTACATTTATAAGTCCCTAGTTTGGGTACTTCTGTCTT
TATGGGATCAACAGCATGTGATAAGCAATACAAAACACTAAGCCTTATAAGAAAAATTTT
AACAAATCGATTAAAGTACTAAACAGAGCAAATATATATGTGACAAAACTAGATTTAAGG
AAATGTGCATTATAATACAGGAGCTCAATAAGAAACTTTAGATCTAGGAAAACATGTATT
TGGGGAGAGAGTTTAGGGGCTTAAGAAGTTATATATTTTTTATTTAAAAATTAAATTATT
GTGTAATTTGGAAGAAGTTGCTTTGAATGTAGGACAAAATTATTTCAAAGATTTTTGTTT
GACAAAAACTAATGTATTTTTGTGCCTTAATATTTGTTCTGTCTTAATAAAATGCTTGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               73-957, gnl|bosTau2|chr11 (2099042-2098181)
               

               
               73-957, gnl|Hg17|chr2 (112592200-112593110)
               

               
               73-957, gnl|Mm7|chr2 (128594228-128595101)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-957, gnl|bosTau2|chr11 (2099042-2098181)
               

               
               73-957, gnl|Hg17|chr2 (112592200-112593110)
               

               
               73-957, gnl|Mm7|chr2 (128594228-128595101)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               eye (0.341006)
               

               
               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	73-957, gnl\|bosTau2\|chr11 (2099042-2098181)
	73-957, gnl\|Hg17\|chr2 (112592200-112593110)
	73-957, gnl\|Mm7\|chr2 (128594228-128595101)

	eye (0.341006)
	spl (0.286369)
	ecc (0.23007)
	rec (0.17307)
	liv (0.146284)
	pty (0.142714)
	ste (0.135208)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)