Non-Coding RNA Search

Ss1.1-rpliv0103_d1.5

Sequence:


               
               GGAATTTTTGTTTTTGATAGCCTTGAAAATGACTTAAGTCCTGATGTCCATTTCAGTTTA
AAGAAAGCCGGAAGTTACTGTTTGTTCTGGTCAAAGGCCAGTAGAAGTTACAGTTCATAT
CAGGATGACCTGACATATGCCAGTCAGATTGACCAGATCAGAAAATACATCAGCCTCCAA
TATAGCCTCCTTGTGAAATTTTTGACCAGATTTACTCTGAACCACCCAAAGTTTCTGGCA
GGCAGGGAAATGGGCAGTGATGCAAAAACGGAGACTCTCTGGAGCTTTTAGAAATAGTTC
ATGGCAAACACAGGACTTTACTCCCTGAGCAAAAGGCCACCTGCTGTTTCTGTGAACTTG
TGTGTTATGTTGCTCACATTCAAAATAAACCAAAGCCTCTGTTTGATGAACCCATATGAT
AGTCAAATTTAGGCTATGGAATGGAGTACTTACATTTAGATTTCATGCATAGTTTGACTC
GAATGTTTAAAAAAACAACTAAAAATCAGGAAGAATGTGCCTTCCCCCCCTTCATTGACT
TTTAATAGATGTCATTGGAATGTAAAATCTAAGTGTGAAAAATATGAAAGGATATTCTTT
AATTCCTGTCAGCTGAATACATATTTAATATGCTTCCAGACTGTTCTAAAATAGTTGAAA
CTTAGAGGCATATAGTGGCTGAAATGATTTTTTAATAAATATACTTTTAAAAGTTTGTGA
CCCACTGATAAAATATGCCTTGATATAATATAGACGTATGACTTCTTATTAATTATTAGT
GAAATCTCTCATCAAGTGCATTTGAAGACATGCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTTTTGTTTTTGATAGCCTTGAAAATGACTTAAGTCCTGATGTCCATTTCAGTTTA
AAGAAAGCCGGAAGTTACTGTTTGTTCTGGTCAAAGGCCAGTAGAAGTTACAGTTCATAT
CAGGATGACCTGACATATGCCAGTCAGATTGACCAGATCAGAAAATACATCAGCCTCCAA
TATAGCCTCCTTGTGAAATTTTTGACCAGATTTACTCTGAACCACCCAAAGTTTCTGGCA
GGCAGGGAAATGGGCAGTGATGCAAAAACGGAGACTCTCTGGAGCTTTTAGAAATAGTTC
ATGGCAAACACAGGACTTTACTCCCTGAGCAAAAGGCCACCTGCTGTTTCTGTGAACTTG
TGTGTTATGTTGCTCACATTCAAAATAAACCAAAGCCTCTGTTTGATGAACCCATATGAT
AGTCAAATTTAGGCTATGGAATGGAGTACTTACATTTAGATTTCATGCATAGTTTGACTC
GAATGTTTAAAAAAACAACTAAAAATCAGGAAGAATGTGCCTTCCCCCCCTTCATTGACT
TTTAATAGATGTCATTGGAATGTAAAATCTAAGTGTGAAAAATATGAAAGGATATTCTTT
AATTCCTGTCAGCTGAATACATATTTAATATGCTTCCAGACTGTTCTAAAATAGTTGAAA
CTTAGAGGCATATAGTGGCTGAAATGATTTTTTAATAAATATACTTTTAAAAGTTTGTGA
CCCACTGATAAAATATGCCTTGATATAATATAGACGTATGACTTCTTATTAATTATTAGT
GAAATCTCTCATCAAGTGCATTTGAAGACATGCACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               18-808, gnl|bosTau2|chr3 (53731767-53732556)
               

               
               18-808, gnl|Hg17|chr1 (65811483-65812299)
               

               
               18-808, gnl|Mm7|chr4 (101188581-101189324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-808, gnl|bosTau2|chr3 (53731767-53732556)
               

               
               18-808, gnl|Hg17|chr1 (65811483-65812299)
               

               
               18-808, gnl|Mm7|chr4 (101188581-101189324)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	18-808, gnl\|bosTau2\|chr3 (53731767-53732556)
	18-808, gnl\|Hg17\|chr1 (65811483-65812299)
	18-808, gnl\|Mm7\|chr4 (101188581-101189324)