Non-Coding RNA Search

Ss1.1-rpliv0103_f23.5

Sequence:


               
               ATGGGTATGTGTTGCCAAAGCTGGCTTTTTATAAAAAAAAAAAAAATTAATAAGAACTCA
AAAAACAAAAGCCAGTATCCTAAAATAAAGGAGAGTAAGACTGTGAAGCCTAAAATGTTT
GGCTGAGAATGAACCTGAAACACCAATTGCCAAACAGTTGCTCACTGTAAATTTGACTCT
CATGCTCCATCCTTTACTTTGACCTTAAAAATCACATTGTTTAGTGTCCACATTCCATGT
TGAGCGTCTAAATCTACAATGTGGAAAAGATGTCCTATGTGATAGACCATGAGGTCTGCT
TTTTTTCTCTTCATTTGAAGCCAGTTTTACTCTCTTTATGTTCTTTAAGGTCAAGTAGGT
CTGCCAGGAACATTGGCAGATAGTATTATTCTGACACCTTTCATTTGCAGAATCTGAAGT
TACTGCTAGTTTACCATCTTTGGGATTTTCTTCAACTGGTGACTGATTAAGTTGAACTTA
AGATTTGTGGACTGAAACTCAAAAGAAACCTCTCTGTTCTATACAATATGTATTTATATA
ACTGAACATAGTTACAAAGAGATCTGAAATTCTATATGTGCAATTTTTCAACCAATGCAA
AAAAACACAGCACAGGTATTGATGAGCTTCTGTCAAGCAGCTTGTGTTGAAATATGATTT
AATAAATGATGATTGTTTTAAACCTGCTGGGAAGTTAGAATTAGGCCATGATGCTGGTCT
CATTTTAACTACAATACTATTTGGCATGAGTCTAAACTTTCATATAAATCACTCTTTTGG
AACAACAAAGGAGAAGGAGAAAAGTAATGGCTTATCAGATGAGCACCAGAGTTACTAAAT
AGTAATGGAATGTTCCCATTCTTTTCTCTCCCAGCCTCAAACTACACAGGTTACTTTTTT
TTTTTTCTCCTTACTCAGAAAGCACCTGTTATTTAATTAAGAAACAGACTGCCTGTAGGT
ATAGTGCAATTATGAATGCTCTAATCATTGTACATACATCTCTCTTGATATTGCATCATC
CATACTGGCTTTGTAATCATTAATGTTTTGGCAGATTGAATGTGCTGTATTGATATGTAT
CTATGTAATTGTATTGTATGTCTTATAGCTAATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGTATGTGTTGCCAAAGCTGGCTTTTTATAAAAAAAAAAAAAATTAATAAGAACTCA
AAAAACAAAAGCCAGTATCCTAAAATAAAGGAGAGTAAGACTGTGAAGCCTAAAATGTTT
GGCTGAGAATGAACCTGAAACACCAATTGCCAAACAGTTGCTCACTGTAAATTTGACTCT
CATGCTCCATCCTTTACTTTGACCTTAAAAATCACATTGTTTAGTGTCCACATTCCATGT
TGAGCGTCTAAATCTACAATGTGGAAAAGATGTCCTATGTGATAGACCATGAGGTCTGCT
TTTTTTCTCTTCATTTGAAGCCAGTTTTACTCTCTTTATGTTCTTTAAGGTCAAGTAGGT
CTGCCAGGAACATTGGCAGATAGTATTATTCTGACACCTTTCATTTGCAGAATCTGAAGT
TACTGCTAGTTTACCATCTTTGGGATTTTCTTCAACTGGTGACTGATTAAGTTGAACTTA
AGATTTGTGGACTGAAACTCAAAAGAAACCTCTCTGTTCTATACAATATGTATTTATATA
ACTGAACATAGTTACAAAGAGATCTGAAATTCTATATGTGCAATTTTTCAACCAATGCAA
AAAAACACAGCACAGGTATTGATGAGCTTCTGTCAAGCAGCTTGTGTTGAAATATGATTT
AATAAATGATGATTGTTTTAAACCTGCTGGGAAGTTAGAATTAGGCCATGATGCTGGTCT
CATTTTAACTACAATACTATTTGGCATGAGTCTAAACTTTCATATAAATCACTCTTTTGG
AACAACAAAGGAGAAGGAGAAAAGTAATGGCTTATCAGATGAGCACCAGAGTTACTAAAT
AGTAATGGAATGTTCCCATTCTTTTCTCTCCCAGCCTCAAACTACACAGGTTACTTTTTT
TTTTTTCTCCTTACTCAGAAAGCACCTGTTATTTAATTAAGAAACAGACTGCCTGTAGGT
ATAGTGCAATTATGAATGCTCTAATCATTGTACATACATCTCTCTTGATATTGCATCATC
CATACTGGCTTTGTAATCATTAATGTTTTGGCAGATTGAATGTGCTGTATTGATATGTAT
CTATGTAATTGTATTGTATGTCTTATAGCTAATTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               627-741, - strand, RNAz p=0.990496
               

               
               938-1055, - strand, RNAz p=0.757068

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               627-741, - strand, RNAz p=0.990496
               

               
               938-1055, - strand, RNAz p=0.757068

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr16 (15109000-15110102)
               

               
               1-1116, gnl|Hg17|chr9 (77564807-77563702)
               

               
               1-1116, gnl|Mm7|chr19 (16085405-16086428)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr16 (15109000-15110102)
               

               
               1-1116, gnl|Hg17|chr9 (77564807-77563702)
               

               
               1-1116, gnl|Mm7|chr19 (16085405-16086428)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mgp (0.461361)
               

               
               cbl (0.344392)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               cbl (0.344392)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	627-741, - strand, RNAz p=0.990496
	938-1055, - strand, RNAz p=0.757068

	1-1116, gnl\|bosTau2\|chr16 (15109000-15110102)
	1-1116, gnl\|Hg17\|chr9 (77564807-77563702)
	1-1116, gnl\|Mm7\|chr19 (16085405-16086428)

	mgp (0.461361)
	cbl (0.344392)
	mas (0.210305)
	aor (0.195274)
	sag (0.182715)
	liv (0.146284)
	kid (0.129735)
	sug (0.127291)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)