Non-Coding RNA Search

Ss1.1-rpliv0103_f9.5

Sequence:


               
               CATTAGGATAGAATTTGGTAGTCTTAGAACTTTATCATTAATGATATACCTGAAAGCATT
CTTTTGGCATGGACCCCAAAGATAGGTTTAGAGCTAGATACTGATGTGGTGATTCTCAAA
CATATTTAGGGACAACAGAATGAAAATTTATAGTTCTTTTGGGGGGGTACATAAAAATGT
TTATATATTGAATTCTGTAATATGAACTAGGGACAAAATTTGCTATGAGAAAATATGGCT
CTTAAGCAATGTATGTGCAAACTATAAGCATATTTCCATAAACAGTATATTATATTGAGA
TGATCAACAGTTTGAAATTTTCTGATATCATCCAGGTATAATATTTCATAGTTTTCAAGC
TTTTTTTCTTCTAGAATTCAGATGAGTAATAGGCAACAAAGGCTTAAGAAAAATTTACTG
TGGAAAATCTTAAAATTGAGAAAATTCAATCTGTTAACTTTATTAAATTTTTTTCTCAGA
ATTGGATATATGGCATTATTTGATTTTAGTAGGAAGCATTTGGATTTAGCTTACAGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAGGATAGAATTTGGTAGTCTTAGAACTTTATCATTAATGATATACCTGAAAGCATT
CTTTTGGCATGGACCCCAAAGATAGGTTTAGAGCTAGATACTGATGTGGTGATTCTCAAA
CATATTTAGGGACAACAGAATGAAAATTTATAGTTCTTTTGGGGGGGTACATAAAAATGT
TTATATATTGAATTCTGTAATATGAACTAGGGACAAAATTTGCTATGAGAAAATATGGCT
CTTAAGCAATGTATGTGCAAACTATAAGCATATTTCCATAAACAGTATATTATATTGAGA
TGATCAACAGTTTGAAATTTTCTGATATCATCCAGGTATAATATTTCATAGTTTTCAAGC
TTTTTTTCTTCTAGAATTCAGATGAGTAATAGGCAACAAAGGCTTAAGAAAAATTTACTG
TGGAAAATCTTAAAATTGAGAAAATTCAATCTGTTAACTTTATTAAATTTTTTTCTCAGA
ATTGGATATATGGCATTATTTGATTTTAGTAGGAAGCATTTGGATTTAGCTTACAGAACA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-540, gnl|bosTau2|chr1 (62166642-62167172)
               

               
               3-540, gnl|canFam2|chr34 (38315968-38316586)
               

               
               3-540, gnl|dasNov1|scaffold_65928 (37807-38425)
               

               
               3-540, gnl|echTel1|scaffold_274486 (4459-3850)
               

               
               3-540, gnl|hg17|chr3 (172089746-172090350)
               

               
               3-540, gnl|Hg17|chr3 (172090362-172089828)
               

               
               3-540, gnl|loxAfr1|scaffold_3947 (16620-16000)
               

               
               3-540, gnl|mm7|chr3 (28613768-28613202)
               

               
               3-540, gnl|Mm7|chr3 (28613188-28613694)
               

               
               3-540, gnl|oryCun1|scaffold_187240 (4373-3750)
               

               
               3-540, gnl|panTro1|chr2 (175578557-175579161)
               

               
               3-540, gnl|rheMac2|chr2 (116151638-116151036)
               

               
               3-540, gnl|rn3|chr2 (116104399-116103837)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-540, gnl|bosTau2|chr1 (62166642-62167172)
               

               
               3-540, gnl|canFam2|chr34 (38315968-38316586)
               

               
               3-540, gnl|dasNov1|scaffold_65928 (37807-38425)
               

               
               3-540, gnl|echTel1|scaffold_274486 (4459-3850)
               

               
               3-540, gnl|hg17|chr3 (172089746-172090350)
               

               
               3-540, gnl|Hg17|chr3 (172090362-172089828)
               

               
               3-540, gnl|loxAfr1|scaffold_3947 (16620-16000)
               

               
               3-540, gnl|mm7|chr3 (28613768-28613202)
               

               
               3-540, gnl|Mm7|chr3 (28613188-28613694)
               

               
               3-540, gnl|oryCun1|scaffold_187240 (4373-3750)
               

               
               3-540, gnl|panTro1|chr2 (175578557-175579161)
               

               
               3-540, gnl|rheMac2|chr2 (116151638-116151036)
               

               
               3-540, gnl|rn3|chr2 (116104399-116103837)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

	3-540, gnl\|bosTau2\|chr1 (62166642-62167172)
	3-540, gnl\|canFam2\|chr34 (38315968-38316586)
	3-540, gnl\|dasNov1\|scaffold_65928 (37807-38425)
	3-540, gnl\|echTel1\|scaffold_274486 (4459-3850)
	3-540, gnl\|hg17\|chr3 (172089746-172090350)
	3-540, gnl\|Hg17\|chr3 (172090362-172089828)
	3-540, gnl\|loxAfr1\|scaffold_3947 (16620-16000)
	3-540, gnl\|mm7\|chr3 (28613768-28613202)
	3-540, gnl\|Mm7\|chr3 (28613188-28613694)
	3-540, gnl\|oryCun1\|scaffold_187240 (4373-3750)
	3-540, gnl\|panTro1\|chr2 (175578557-175579161)
	3-540, gnl\|rheMac2\|chr2 (116151638-116151036)
	3-540, gnl\|rn3\|chr2 (116104399-116103837)