Ss1.1-rpliv0104_h17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGACCCAAGCCACTGCAGTGACAACCCACTGCACTACAAGAGAACTCCCAAAGTGTTT TTCAAGAGTGTAGCTGTGTCAACGTGTTATGATGCCGTCTCGTACCAACCTGACTACTGG AATCCCCAGTAGTAAAGTGAAATACTCAAGGCTCTCCAGTACAGACGATGGCTACATTGA CCTTCAGGGAGAAACTAACTGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGACCCAAGCCACTGCAGTGACAACCCACTGCACTACAAGAGAACTCCCAAAGTGTTT TTCAAGAGTGTAGCTGTGTCAACGTGTTATGATGCCGTCTCGTACCAACCTGACTACTGG AATCCCCAGTAGTAAAGTGAAATACTCAAGGCTCTCCAGTACAGACGATGGCTACATTGA CCTTCAGGGAGAAACTAACTGCTA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 59-188, + strand, RNAz p=0.998909 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 59-188, + strand, RNAz p=0.998909 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001009924, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 59-188, gnl|bosTau2|chr13 (30456095-30456223) | |
| 59-188, gnl|canFam2|chr24 (19486459-19486377) | |
| 59-188, gnl|canFam2|chr24 (19486477-19486357) | |
| 59-188, gnl|danRer3|chr10 (8313961-8314081) | |
| 59-188, gnl|dasNov1|scaffold_36969 (2330-2450) | |
| 59-188, gnl|dasNov1|scaffold_6498 (15779-15697) | |
| 59-188, gnl|echTel1|scaffold_282492 (43144-43062) | |
| 59-188, gnl|echTel1|scaffold_307749 (368-249) | |
| 59-188, gnl|fr1|chrUn (182340260-182340151) | |
| 59-188, gnl|galGal2|chr22 (337751-337628) | |
| 59-188, gnl|hg17|chr12 (38219824-38219906) | |
| 59-188, gnl|hg17|chr20 (5037961-5038081) | |
| 59-188, gnl|Hg17|chr20 (5038105-5037977) | |
| 59-188, gnl|loxAfr1|scaffold_55182 (26229-26291) | |
| 59-188, gnl|loxAfr1|scaffold_9740 (38167-38287) | |
| 59-188, gnl|mm7|chr2 (131986810-131986892) | |
| 59-188, gnl|mm7|chr2 (131986792-131986912) | |
| 59-188, gnl|Mm7|chr2 (131986931-131986808) | |
| 59-188, gnl|monDom2|scaffold_1 (95116155-95116280) | |
| 59-188, gnl|oryCun1|scaffold_203628 (32333-32251) | |
| 59-188, gnl|oryCun1|scaffold_203628 (32352-32231) | |
| 59-188, gnl|panTro1|chr10 (38792922-38793004) | |
| 59-188, gnl|panTro1|chr21 (5002849-5002969) | |
| 59-188, gnl|rheMac2|chr10 (38446969-38447089) | |
| 59-188, gnl|rheMac2|chr11 (36387792-36387874) | |
| 59-188, gnl|rn3|chr3 (119910710-119910792) | |
| 59-188, gnl|rn3|chr3 (119910707-119910812) | |
| 59-188, gnl|tetNig1|chr4 (5952138-5952218) | |
| 59-188, gnl|xenTro1|scaffold_110 (809130-809236) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-188, gnl|bosTau2|chr13 (30456095-30456223) | |
| 59-188, gnl|canFam2|chr24 (19486459-19486377) | |
| 59-188, gnl|canFam2|chr24 (19486477-19486357) | |
| 59-188, gnl|danRer3|chr10 (8313961-8314081) | |
| 59-188, gnl|dasNov1|scaffold_36969 (2330-2450) | |
| 59-188, gnl|dasNov1|scaffold_6498 (15779-15697) | |
| 59-188, gnl|echTel1|scaffold_282492 (43144-43062) | |
| 59-188, gnl|echTel1|scaffold_307749 (368-249) | |
| 59-188, gnl|fr1|chrUn (182340260-182340151) | |
| 59-188, gnl|galGal2|chr22 (337751-337628) | |
| 59-188, gnl|hg17|chr12 (38219824-38219906) | |
| 59-188, gnl|hg17|chr20 (5037961-5038081) | |
| 59-188, gnl|Hg17|chr20 (5038105-5037977) | |
| 59-188, gnl|loxAfr1|scaffold_55182 (26229-26291) | |
| 59-188, gnl|loxAfr1|scaffold_9740 (38167-38287) | |
| 59-188, gnl|mm7|chr2 (131986810-131986892) | |
| 59-188, gnl|mm7|chr2 (131986792-131986912) | |
| 59-188, gnl|Mm7|chr2 (131986931-131986808) | |
| 59-188, gnl|monDom2|scaffold_1 (95116155-95116280) | |
| 59-188, gnl|oryCun1|scaffold_203628 (32333-32251) | |
| 59-188, gnl|oryCun1|scaffold_203628 (32352-32231) | |
| 59-188, gnl|panTro1|chr10 (38792922-38793004) | |
| 59-188, gnl|panTro1|chr21 (5002849-5002969) | |
| 59-188, gnl|rheMac2|chr10 (38446969-38447089) | |
| 59-188, gnl|rheMac2|chr11 (36387792-36387874) | |
| 59-188, gnl|rn3|chr3 (119910710-119910792) | |
| 59-188, gnl|rn3|chr3 (119910707-119910812) | |
| 59-188, gnl|tetNig1|chr4 (5952138-5952218) | |
| 59-188, gnl|xenTro1|scaffold_110 (809130-809236) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| clu (0.119646) |