Ss1.1-rpliv0106_h9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATACCACAGCCAATCCAAACTGTTCAACCTAGTCCCTTTTCTGAGGGTACCGCTTCAA ATATGACTGTTATGCCACCTGTTGCTGAAGCTCCAAACTATCAAGGTCCACCACCACCTT ATCCAAAACATCTGCTCCACCAAAACCCATCTGTCCCTCCGTATGAATCAGTCAATAAAT CTAGCAAAGAGGATCAGCCGACCTTGTCCAAGGAAGACGAGGCTGAAAAAAATTATGAAA ATGTTGATAATGGAGATAAAGAAAAGAAACAGATTACCACCTCACCTATCACCGTTAGGA AAAACAAGAAAGATGAAGAGCGGAGGGAATCGCGTATTCAAAGTTATTCTCCTCAGGCGT TTAAATTCTTTATGGAGCAACATGTAGAAAATGTACTCAAATCTCATCAACAGCGTCTAC ATCGCAAAAAACAATTAGAGAACGAAATGATGCGGGTTGGATTATCTCAAGATGCCCAAG ATCAAATGAGAAAGATGCTTTGCCAAAAAGAGTCTAATTACATCCGTCTTAAAAGGGCTA AAATGGACAAGTCTATGTTTGTGAAGATAAAGACATTAGGAATAGGAGCATTTGGTGAAG TCTGTCTAGCAAGAAAAGTAGATACTAAGGCTTTGTATGCAACAAAAACTCTTCGAAAGA AAGATGTTCTGCTTCGAAATCAAGTTGCTCATGTTAAAGCTGAGAGAGATATCCTGGCCG AAGCTGACAACGAATGGGTAGTTCGTCTTTACTATTCATTCCAAGATAAGGACAATTTAT ACTTTGTAATGGACTATATTCCTGGGGGTGATATGATGAGCCTATTAATTAGAATGGGCA TCTTTCCAGAAAATCTGGCACGGTTCTACATAGCAGAACTTACCTGTGCAGTTGAAAGTG TTCATAAAATGGGTTTTATTCATAGAGATATTAAACCTGATAACATTTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATACCACAGCCAATCCAAACTGTTCAACCTAGTCCCTTTTCTGAGGGTACCGCTTCAA ATATGACTGTTATGCCACCTGTTGCTGAAGCTCCAAACTATCAAGGTCCACCACCACCTT ATCCAAAACATCTGCTCCACCAAAACCCATCTGTCCCTCCGTATGAATCAGTCAATAAAT CTAGCAAAGAGGATCAGCCGACCTTGTCCAAGGAAGACGAGGCTGAAAAAAATTATGAAA ATGTTGATAATGGAGATAAAGAAAAGAAACAGATTACCACCTCACCTATCACCGTTAGGA AAAACAAGAAAGATGAAGAGCGGAGGGAATCGCGTATTCAAAGTTATTCTCCTCAGGCGT TTAAATTCTTTATGGAGCAACATGTAGAAAATGTACTCAAATCTCATCAACAGCGTCTAC ATCGCAAAAAACAATTAGAGAACGAAATGATGCGGGTTGGATTATCTCAAGATGCCCAAG ATCAAATGAGAAAGATGCTTTGCCAAAAAGAGTCTAATTACATCCGTCTTAAAAGGGCTA AAATGGACAAGTCTATGTTTGTGAAGATAAAGACATTAGGAATAGGAGCATTTGGTGAAG TCTGTCTAGCAAGAAAAGTAGATACTAAGGCTTTGTATGCAACAAAAACTCTTCGAAAGA AAGATGTTCTGCTTCGAAATCAAGTTGCTCATGTTAAAGCTGAGAGAGATATCCTGGCCG AAGCTGACAACGAATGGGTAGTTCGTCTTTACTATTCATTCCAAGATAAGGACAATTTAT ACTTTGTAATGGACTATATTCCTGGGGGTGATATGATGAGCCTATTAATTAGAATGGGCA TCTTTCCAGAAAATCTGGCACGGTTCTACATAGCAGAACTTACCTGTGCAGTTGAAAGTG TTCATAAAATGGGTTTTATTCATAGAGATATTAAACCTGATAACATTTTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 734-853, + strand, RNAz p=0.96024 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 734-853, + strand, RNAz p=0.96024 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 455-949, gnl|bosTau2|chr7 (68175357-68175851) | |
| 455-949, gnl|canFam2|chr1 (43484019-43484624) | |
| 455-949, gnl|danRer3|chr20 (1657263-1657863) | |
| 455-949, gnl|dasNov1|scaffold_59066 (7116-6509) | |
| 455-949, gnl|echTel1|scaffold_212178 (5973-5368) | |
| 455-949, gnl|fr1|chrUn (177159046-177159646) | |
| 455-949, gnl|galGal2|chr3 (47152026-47152631) | |
| 455-949, gnl|hg17|chr6 (150093120-150093725) | |
| 455-949, gnl|Hg17|chr6 (150093708-150093214) | |
| 455-949, gnl|loxAfr1|scaffold_10100 (19056-18451) | |
| 455-949, gnl|mm7|chr10 (7406297-7405692) | |
| 455-949, gnl|Mm7|chr10 (7405707-7406201) | |
| 455-949, gnl|monDom2|scaffold_0 (56381625-56381020) | |
| 455-949, gnl|oryCun1|scaffold_187551 (205-810) | |
| 455-949, gnl|panTro1|chr5 (153520922-153521528) | |
| 455-949, gnl|rheMac2|chr4 (113609296-113608691) | |
| 455-949, gnl|rn3|chr1 (2375836-2375231) | |
| 455-949, gnl|tetNig1|chr14 (1861559-1862164) | |
| 455-949, gnl|xenTro1|scaffold_1979 (14967-15568) | |
| 477-946, gnl|bosTau2|chr12 (19708752-19709221) | |
| 477-946, gnl|canFam2|chr25 (20146075-20145475) | |
| 477-946, gnl|danRer3|chr9 (14728751-14728157) | |
| 477-946, gnl|dasNov1|scaffold_39963 (6116-6720) | |
| 477-946, gnl|echTel1|scaffold_273846 (10436-11040) | |
| 477-946, gnl|fr1|chrUn (78363730-78363016) | |
| 477-946, gnl|galGal2|chr1 (170654388-170653785) | |
| 477-946, gnl|hg17|chr13 (20455361-20455966) | |
| 477-946, gnl|Hg17|chr13 (20455924-20455455) | |
| 477-946, gnl|loxAfr1|scaffold_17597 (21402-20801) | |
| 477-946, gnl|mm7|chr14 (52564835-52565435) | |
| 477-946, gnl|Mm7|chr14 (52565398-52564929) | |
| 477-946, gnl|monDom2|scaffold_15 (28796872-28797477) | |
| 477-946, gnl|oryCun1|scaffold_91461 (3823-4424) | |
| 477-946, gnl|panTro1|chr14 (19626736-19627340) | |
| 477-946, gnl|rheMac2|chr4 (113609293-113608699) | |
| 477-946, gnl|rn3|chr15 (36743199-36743799) | |
| 477-946, gnl|tetNig1|chr2 (17650761-17650089) | |
| 477-946, gnl|xenTro1|scaffold_952 (207078-206489) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 455-949, gnl|bosTau2|chr7 (68175357-68175851) | |
| 455-949, gnl|canFam2|chr1 (43484019-43484624) | |
| 455-949, gnl|danRer3|chr20 (1657263-1657863) | |
| 455-949, gnl|dasNov1|scaffold_59066 (7116-6509) | |
| 455-949, gnl|echTel1|scaffold_212178 (5973-5368) | |
| 455-949, gnl|fr1|chrUn (177159046-177159646) | |
| 455-949, gnl|galGal2|chr3 (47152026-47152631) | |
| 455-949, gnl|hg17|chr6 (150093120-150093725) | |
| 455-949, gnl|Hg17|chr6 (150093708-150093214) | |
| 455-949, gnl|loxAfr1|scaffold_10100 (19056-18451) | |
| 455-949, gnl|mm7|chr10 (7406297-7405692) | |
| 455-949, gnl|Mm7|chr10 (7405707-7406201) | |
| 455-949, gnl|monDom2|scaffold_0 (56381625-56381020) | |
| 455-949, gnl|oryCun1|scaffold_187551 (205-810) | |
| 455-949, gnl|panTro1|chr5 (153520922-153521528) | |
| 455-949, gnl|rheMac2|chr4 (113609296-113608691) | |
| 455-949, gnl|rn3|chr1 (2375836-2375231) | |
| 455-949, gnl|tetNig1|chr14 (1861559-1862164) | |
| 455-949, gnl|xenTro1|scaffold_1979 (14967-15568) | |
| 477-946, gnl|bosTau2|chr12 (19708752-19709221) | |
| 477-946, gnl|canFam2|chr25 (20146075-20145475) | |
| 477-946, gnl|danRer3|chr9 (14728751-14728157) | |
| 477-946, gnl|dasNov1|scaffold_39963 (6116-6720) | |
| 477-946, gnl|echTel1|scaffold_273846 (10436-11040) | |
| 477-946, gnl|fr1|chrUn (78363730-78363016) | |
| 477-946, gnl|galGal2|chr1 (170654388-170653785) | |
| 477-946, gnl|hg17|chr13 (20455361-20455966) | |
| 477-946, gnl|Hg17|chr13 (20455924-20455455) | |
| 477-946, gnl|loxAfr1|scaffold_17597 (21402-20801) | |
| 477-946, gnl|mm7|chr14 (52564835-52565435) | |
| 477-946, gnl|Mm7|chr14 (52565398-52564929) | |
| 477-946, gnl|monDom2|scaffold_15 (28796872-28797477) | |
| 477-946, gnl|oryCun1|scaffold_91461 (3823-4424) | |
| 477-946, gnl|panTro1|chr14 (19626736-19627340) | |
| 477-946, gnl|rheMac2|chr4 (113609293-113608699) | |
| 477-946, gnl|rn3|chr15 (36743199-36743799) | |
| 477-946, gnl|tetNig1|chr2 (17650761-17650089) | |
| 477-946, gnl|xenTro1|scaffold_952 (207078-206489) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| liv (0.146284) | |
| pgl (0.118483) |