Non-Coding RNA Search

Ss1.1-rpliv0106_l15.5

Sequence:


               
               GGAGAAAGAGGAGTATGAGCATCAGAAGAGGGAACTGGAGCAGATTTGTCGTCCCATCTT
CTCCAGGCTCTATGGGGGCTCTGGTATCCCTGGGGGTAGCAGTTGTGGTGCTCAAGCTCG
ACAGGGAGCCCCCAGTACTGGCCCTGTCATTGAGGAGGTTGATTAAATGGCCCCTCCTGA
CAAGTCAGCTGTGACTGTAAGGTCTGAGCTTGTGGACTTTCTGTAACTTCAGGTGTGGGA
GTGTAAGGGGAATCTTACCCCTAAATAGAGAGGGTTTTTTTTTGTCAGTATCTTATACCT
GAGGTATCTGTCATTTGACTTAAAAAAAAAATCTTCTCCCACTTGGTCTGAGCTTGTGGA
ACTTTCTAGACTGTCTATATGATCCTGCCTGTAACTTCAGGTGCGGGAGTGTAAGGGGAA
TCTTACCCCTAAATAGGGGTTTTTTTGTCAGTATCTTTTATACCTGAGGTATCTGTCATT
TGACTTAAAAAAAAAATCTTCTCCCACTTCAAACAAGCAGAAGTAACCATTTATGAACAT
TTGTGTGGCACTTTAACGTTGCTTTCATCTAACATTTAATGTATTTTGTTACTTGCATGT
ATGGATTTTGTTATGTGAAATAATAGAGCTAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAAGAGGAGTATGAGCATCAGAAGAGGGAACTGGAGCAGATTTGTCGTCCCATCTT
CTCCAGGCTCTATGGGGGCTCTGGTATCCCTGGGGGTAGCAGTTGTGGTGCTCAAGCTCG
ACAGGGAGCCCCCAGTACTGGCCCTGTCATTGAGGAGGTTGATTAAATGGCCCCTCCTGA
CAAGTCAGCTGTGACTGTAAGGTCTGAGCTTGTGGACTTTCTGTAACTTCAGGTGTGGGA
GTGTAAGGGGAATCTTACCCCTAAATAGAGAGGGTTTTTTTTTGTCAGTATCTTATACCT
GAGGTATCTGTCATTTGACTTAAAAAAAAAATCTTCTCCCACTTGGTCTGAGCTTGTGGA
ACTTTCTAGACTGTCTATATGATCCTGCCTGTAACTTCAGGTGCGGGAGTGTAAGGGGAA
TCTTACCCCTAAATAGGGGTTTTTTTGTCAGTATCTTTTATACCTGAGGTATCTGTCATT
TGACTTAAAAAAAAAATCTTCTCCCACTTCAAACAAGCAGAAGTAACCATTTATGAACAT
TTGTGTGGCACTTTAACGTTGCTTTCATCTAACATTTAATGTATTTTGTTACTTGCATGT
ATGGATTTTGTTATGTGAAATAATAGAGCTAAATAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-120, + strand, RNAz p=0.659406
               

               
               423-530, - strand, RNAz p=0.867315

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.659406
               

               
               423-530, - strand, RNAz p=0.867315

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               62-156, + strand, RNAmicro p=0.982278

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               62-156, + strand, RNAmicro p=0.982278

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-237, gnl|bosTau2|chr3 (19183884-19183649)
               

               
               2-237, gnl|Hg17|chr1 (158309271-158309505)
               


               
               345-636, gnl|bosTau2|chr3 (19183685-19183392)
               

               
               345-636, gnl|Hg17|chr1 (158309470-158309742)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-237, gnl|bosTau2|chr3 (19183884-19183649)
               

               
               2-237, gnl|Hg17|chr1 (158309271-158309505)
               


               
               345-636, gnl|bosTau2|chr3 (19183685-19183392)
               

               
               345-636, gnl|Hg17|chr1 (158309470-158309742)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ldo (0.0970026)

	2-120, + strand, RNAz p=0.659406
	423-530, - strand, RNAz p=0.867315

	2-237, gnl\|bosTau2\|chr3 (19183884-19183649)
	2-237, gnl\|Hg17\|chr1 (158309271-158309505)

	345-636, gnl\|bosTau2\|chr3 (19183685-19183392)
	345-636, gnl\|Hg17\|chr1 (158309470-158309742)