Ss1.1-rpliv0106_l4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGGCCATGGCGGCGCCCGGGTTGGGAGGCCGCACCGCCCAGTGCTCAGAAGGAGTCG TCTCGGCGGAATCATCCGTCACCGCCAGAACGCCAGTGTCGGTCGTATCCCACGTGTCCC TCGAGCTGCCGGTCTCGCCGGGGCAGGTTGCAGAGCCGCCCAACAAGAACCTGTGGGAGC AGATCTGTGAGGAGTATGAAGCCGAGCTGCCTCCCTTTCCAGAAGGATATAAAGTCAAGC AAGAAGCCACAGTTACCGTGCCACCACTGGAGGACATGGTTTTCCGTGGCTTCAACGCAG AACACCTTTATTCAGCTTCCCGTTTATCCGTGGACTCCCAAGTACCCTGTCCTCAAGCTC CATGGGAAACAATTGACCCCAAAACATGTTCCCCCAAAGAATATTTGGAAACGTACATCT TTCCAGTTCTGCTTCCGGGAATGGCCAGCCTGCTTCACCAAGCAAAGAAAGAAAAATGTT TTGAGAGGAAAAGAACCAAATTCATGGCCTGTGATTTTCTGACCGAATGGTTATACAATC AAAATCCAAAGGGGGCAGGGGAGCCATTCACAGAATTCTTCTCCATCCCATTTGTGGAAG AGTGGCTGAAATATCACCCCCGGTCAGCAATCCCACTCTCCCTCCTGCTGACAGAAGCAG CAGCAGCACTCATCATTCAGTCCTTCTGGAGAGCCTATCTGGTTCGCTGGGATCCTGAGA TTCAAGAATTGCGTCAGTGGCAGAAGAAACTGCGTGAGGACAAGTACATCCGAGAGCGAG TCAAAATATTCTGGACCAAACAGGAAAATAAAGTGAAATGCAGAATGGAAGATGAGGAAG AGCCTGCAGCTAAGACGCCACATCCTTAACCGCAGTTGGTATCTTTTCCCTTCGGCGCTC CCATCACCCGACTCAAGGAAAAAAAAGTTCCTTCCTCCATGTCTTTAAAGACTAGATTTG GTGCATTTGAATACAGAATCTTTTCTGCACAAGCCAGAATTTGTTGCAAATCTGATTTAG TGCAAATAGGTTTTCGTAAGGAAGCGCTAGTGTTTTTCTGCATTACCCCCAGTTTTATTC TTTCATCGTGTGTATCTTCAGTGCTTCAGGATTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGGCCATGGCGGCGCCCGGGTTGGGAGGCCGCACCGCCCAGTGCTCAGAAGGAGTCG TCTCGGCGGAATCATCCGTCACCGCCAGAACGCCAGTGTCGGTCGTATCCCACGTGTCCC TCGAGCTGCCGGTCTCGCCGGGGCAGGTTGCAGAGCCGCCCAACAAGAACCTGTGGGAGC AGATCTGTGAGGAGTATGAAGCCGAGCTGCCTCCCTTTCCAGAAGGATATAAAGTCAAGC AAGAAGCCACAGTTACCGTGCCACCACTGGAGGACATGGTTTTCCGTGGCTTCAACGCAG AACACCTTTATTCAGCTTCCCGTTTATCCGTGGACTCCCAAGTACCCTGTCCTCAAGCTC CATGGGAAACAATTGACCCCAAAACATGTTCCCCCAAAGAATATTTGGAAACGTACATCT TTCCAGTTCTGCTTCCGGGAATGGCCAGCCTGCTTCACCAAGCAAAGAAAGAAAAATGTT TTGAGAGGAAAAGAACCAAATTCATGGCCTGTGATTTTCTGACCGAATGGTTATACAATC AAAATCCAAAGGGGGCAGGGGAGCCATTCACAGAATTCTTCTCCATCCCATTTGTGGAAG AGTGGCTGAAATATCACCCCCGGTCAGCAATCCCACTCTCCCTCCTGCTGACAGAAGCAG CAGCAGCACTCATCATTCAGTCCTTCTGGAGAGCCTATCTGGTTCGCTGGGATCCTGAGA TTCAAGAATTGCGTCAGTGGCAGAAGAAACTGCGTGAGGACAAGTACATCCGAGAGCGAG TCAAAATATTCTGGACCAAACAGGAAAATAAAGTGAAATGCAGAATGGAAGATGAGGAAG AGCCTGCAGCTAAGACGCCACATCCTTAACCGCAGTTGGTATCTTTTCCCTTCGGCGCTC CCATCACCCGACTCAAGGAAAAAAAAGTTCCTTCCTCCATGTCTTTAAAGACTAGATTTG GTGCATTTGAATACAGAATCTTTTCTGCACAAGCCAGAATTTGTTGCAAATCTGATTTAG TGCAAATAGGTTTTCGTAAGGAAGCGCTAGTGTTTTTCTGCATTACCCCCAGTTTTATTC TTTCATCGTGTGTATCTTCAGTGCTTCAGGATTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 279-389, - strand, RNAz p=0.908419 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 279-389, - strand, RNAz p=0.908419 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-203, gnl|bosTau2|chr25 (16993712-16993911) | |
| 3-203, gnl|canFam2|chr6 (28592419-28592085) | |
| 3-203, gnl|dasNov1|scaffold_55897 (3589-3255) | |
| 3-203, gnl|echTel1|scaffold_267870 (2129-2446) | |
| 3-203, gnl|hg17|chr16 (19636979-19637307) | |
| 3-203, gnl|Hg17|chr16 (19637124-19637320) | |
| 3-203, gnl|loxAfr1|scaffold_194849 (281-615) | |
| 3-203, gnl|mm7|chr7 (114778203-114778531) | |
| 3-203, gnl|Mm7|chr7 (114778342-114778544) | |
| 3-203, gnl|monDom2|scaffold_19 (39857740-39858173) | |
| 3-203, gnl|oryCun1|scaffold_40387 (2897-2557) | |
| 3-203, gnl|panTro1|chr18 (20101043-20101371) | |
| 3-203, gnl|rheMac2|chr20 (18698360-18698688) | |
| 3-203, gnl|rn3|chr1 (177228802-177229130) | |
| 258-389, gnl|bosTau2|chr25 (17013438-17013569) | |
| 258-389, gnl|canFam2|chr6 (28580424-28580118) | |
| 258-389, gnl|dasNov1|scaffold_64023 (2506-2210) | |
| 258-389, gnl|echTel1|scaffold_273560 (741-434) | |
| 258-389, gnl|hg17|chr16 (19652469-19652784) | |
| 258-389, gnl|Hg17|chr16 (19652521-19652652) | |
| 258-389, gnl|loxAfr1|scaffold_121272 (1413-1120) | |
| 258-389, gnl|mm7|chr7 (114798765-114799071) | |
| 258-389, gnl|Mm7|chr7 (114798815-114798946) | |
| 258-389, gnl|panTro1|chr18 (20116597-20116912) | |
| 258-389, gnl|rheMac2|chr20 (18714941-18715256) | |
| 258-389, gnl|rn3|chr1 (177250254-177250551) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-203, gnl|bosTau2|chr25 (16993712-16993911) | |
| 3-203, gnl|canFam2|chr6 (28592419-28592085) | |
| 3-203, gnl|dasNov1|scaffold_55897 (3589-3255) | |
| 3-203, gnl|echTel1|scaffold_267870 (2129-2446) | |
| 3-203, gnl|hg17|chr16 (19636979-19637307) | |
| 3-203, gnl|Hg17|chr16 (19637124-19637320) | |
| 3-203, gnl|loxAfr1|scaffold_194849 (281-615) | |
| 3-203, gnl|mm7|chr7 (114778203-114778531) | |
| 3-203, gnl|Mm7|chr7 (114778342-114778544) | |
| 3-203, gnl|monDom2|scaffold_19 (39857740-39858173) | |
| 3-203, gnl|oryCun1|scaffold_40387 (2897-2557) | |
| 3-203, gnl|panTro1|chr18 (20101043-20101371) | |
| 3-203, gnl|rheMac2|chr20 (18698360-18698688) | |
| 3-203, gnl|rn3|chr1 (177228802-177229130) | |
| 258-389, gnl|bosTau2|chr25 (17013438-17013569) | |
| 258-389, gnl|canFam2|chr6 (28580424-28580118) | |
| 258-389, gnl|dasNov1|scaffold_64023 (2506-2210) | |
| 258-389, gnl|echTel1|scaffold_273560 (741-434) | |
| 258-389, gnl|hg17|chr16 (19652469-19652784) | |
| 258-389, gnl|Hg17|chr16 (19652521-19652652) | |
| 258-389, gnl|loxAfr1|scaffold_121272 (1413-1120) | |
| 258-389, gnl|mm7|chr7 (114798765-114799071) | |
| 258-389, gnl|Mm7|chr7 (114798815-114798946) | |
| 258-389, gnl|panTro1|chr18 (20116597-20116912) | |
| 258-389, gnl|rheMac2|chr20 (18714941-18715256) | |
| 258-389, gnl|rn3|chr1 (177250254-177250551) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) |