Non-Coding RNA Search

Ss1.1-rpliv0106_m24.5

Sequence:


               
               ACACCTCACAGTACATCAGAGAACACATACAGGGGAGAAACCCTATAAATGTAAGGAATG
TGGGAAATTCTTCTCTAGAAATTCACACCTCAAAACTCATCAGAGAACTCACACGGGAGA
GAAACCCTATGAATGTAAGGAATGTGGGAAATGCTTCTACCAGAAGTCAGCCCTAACAGT
ACATCAGCGAACTCACACAGGGGAGAAGCCCTTTGAATGTAATAAATGTGGGAAAAACTT
TTACTATAAATCAGACCTCACCAAACATCAGAGAAAACACACAGGGGAGAAGCCCTATGA
ATGTAATGAGTGTGGGAAATCTTTCTCTGTGAATTCAGTCCTCAGATTACATCAAAGGAC
TCACACGGGAGAGAAACCTTATGAATGTAAGGAATGTGGGAAATCCTTCTCTCAGAAATC
ACATTTTGTCATACATCAGAGAAAACACACAGGAGAAAAACCCTTTGAATGTCAGGAGTG
TAAGAAAACTTTTTTCCAGAAATCAAAACTCACTGCACATCAGAAGACACACACAGAAGG
GAAAAGCTTATAAATAGTATAAATTGGGAAATTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCTCACAGTACATCAGAGAACACATACAGGGGAGAAACCCTATAAATGTAAGGAATG
TGGGAAATTCTTCTCTAGAAATTCACACCTCAAAACTCATCAGAGAACTCACACGGGAGA
GAAACCCTATGAATGTAAGGAATGTGGGAAATGCTTCTACCAGAAGTCAGCCCTAACAGT
ACATCAGCGAACTCACACAGGGGAGAAGCCCTTTGAATGTAATAAATGTGGGAAAAACTT
TTACTATAAATCAGACCTCACCAAACATCAGAGAAAACACACAGGGGAGAAGCCCTATGA
ATGTAATGAGTGTGGGAAATCTTTCTCTGTGAATTCAGTCCTCAGATTACATCAAAGGAC
TCACACGGGAGAGAAACCTTATGAATGTAAGGAATGTGGGAAATCCTTCTCTCAGAAATC
ACATTTTGTCATACATCAGAGAAAACACACAGGAGAAAAACCCTTTGAATGTCAGGAGTG
TAAGAAAACTTTTTTCCAGAAATCAAAACTCACTGCACATCAGAAGACACACACAGAAGG
GAAAAGCTTATAAATAGTATAAATTGGGAAATTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55733232|emb|CAH93299.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55733232|emb|CAH93299.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-571, gnl|bosTau2|chr10 (8996712-8996143)
               

               
               1-571, gnl|Hg17|chr19 (42818517-42817864)
               

               
               1-571, gnl|Mm7|chr2 (127310143-127309658)
               


               
               3-545, gnl|bosTau2|chr10 (8996542-8996000)
               

               
               3-545, gnl|Hg17|chr19 (42818347-42817755)
               

               
               3-545, gnl|Mm7|chr2 (127309973-127309515)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-571, gnl|bosTau2|chr10 (8996712-8996143)
               

               
               1-571, gnl|Hg17|chr19 (42818517-42817864)
               

               
               1-571, gnl|Mm7|chr2 (127310143-127309658)
               


               
               3-545, gnl|bosTau2|chr10 (8996542-8996000)
               

               
               3-545, gnl|Hg17|chr19 (42818347-42817755)
               

               
               3-545, gnl|Mm7|chr2 (127309973-127309515)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               eru (0.120048)

	1-571, gnl\|bosTau2\|chr10 (8996712-8996143)
	1-571, gnl\|Hg17\|chr19 (42818517-42817864)
	1-571, gnl\|Mm7\|chr2 (127310143-127309658)

	3-545, gnl\|bosTau2\|chr10 (8996542-8996000)
	3-545, gnl\|Hg17\|chr19 (42818347-42817755)
	3-545, gnl\|Mm7\|chr2 (127309973-127309515)