Non-Coding RNA Search

Ss1.1-rpliv0107_d5.5

Sequence:


               
               TTTTTTTACAAGGTTTACGTGTCTCAAAACACACTGTCTTCCCAGTATGTAAATTAAAAA
AAAAAAAACCAGTTCACCCAAGTTGCTTCTAGCCTACTGAGATCCACGTGACGGAGATCT
TTTCAATATTGAGTCTTCTTCATTAGCTATGTACTTCTGTGCTAAAACCCCACACAGAGC
TCCTGTGCTATCATATAAAGCAACATCACAGTACCCATGGCGGTAAAGGCACGCTTAGGT
CACCCCCTGATCCTTCTACAAGGTTTTCATCCCCCTGAGGATGGAAGGCAGTGTCTTTTG
ATGAGTTATCTAGCTTAGAAATGACAGAACTATTGCTAATGTGTAACACCCTTCGTTGTA
TAAGCTTCAGTGGTACCGATGAACCAGAATGAATGTGTATCTTCTCAGAAACCCTCCTTC
AATATTCTGTTGGGTCATGCTGCTAATGTAACTTGGGACACAACTCTCCATGGTGCTACA
GACTCCTTTGTCTCGTTCAGTCATATTTTTTTTTTATCCATAGGAAAAAAAGGACTCCAT
TAGGGGTAAAGGTGTACAATATATTTTTATACTGTGACTTCACGTGTCCTTAACAGACTT
TCACACCACCCACCACGACGTATTCACGTGCACTTGCAAAAGGAGATCTCGGATGTGCAA
ATGTCACCAGAACAAACCCAGCTTCTGTCCACAAGGTGACTGTACTTCAGAACACCCCGC
GGGCTCTGTGATAGGGTGTGGAGTGAAGATCATGCTGTGTGTGACTAACAGCCCTTTGCG
TTTAACAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTACAAGGTTTACGTGTCTCAAAACACACTGTCTTCCCAGTATGTAAATTAAAAA
AAAAAAAACCAGTTCACCCAAGTTGCTTCTAGCCTACTGAGATCCACGTGACGGAGATCT
TTTCAATATTGAGTCTTCTTCATTAGCTATGTACTTCTGTGCTAAAACCCCACACAGAGC
TCCTGTGCTATCATATAAAGCAACATCACAGTACCCATGGCGGTAAAGGCACGCTTAGGT
CACCCCCTGATCCTTCTACAAGGTTTTCATCCCCCTGAGGATGGAAGGCAGTGTCTTTTG
ATGAGTTATCTAGCTTAGAAATGACAGAACTATTGCTAATGTGTAACACCCTTCGTTGTA
TAAGCTTCAGTGGTACCGATGAACCAGAATGAATGTGTATCTTCTCAGAAACCCTCCTTC
AATATTCTGTTGGGTCATGCTGCTAATGTAACTTGGGACACAACTCTCCATGGTGCTACA
GACTCCTTTGTCTCGTTCAGTCATATTTTTTTTTTATCCATAGGAAAAAAAGGACTCCAT
TAGGGGTAAAGGTGTACAATATATTTTTATACTGTGACTTCACGTGTCCTTAACAGACTT
TCACACCACCCACCACGACGTATTCACGTGCACTTGCAAAAGGAGATCTCGGATGTGCAA
ATGTCACCAGAACAAACCCAGCTTCTGTCCACAAGGTGACTGTACTTCAGAACACCCCGC
GGGCTCTGTGATAGGGTGTGGAGTGAAGATCATGCTGTGTGTGACTAACAGCCCTTTGCG
TTTAACAAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               503-658, + strand, RNAz p=0.991351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               503-658, + strand, RNAz p=0.991351

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               532-644, CR552804 Normalized and Subtracted bovine embryonic and 
(emb|CR552804.2|), blast E-value=3e-30, identity=91.23% 
               

               
               532-653, xz91g05.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|AW339499.1|), blast E-value=2e-22, identity=86.89% 
               

               
               532-653, 7n64h11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BF115791.1|), blast E-value=2e-22, identity=86.89% 
               

               
               532-649, CT020019A10F03 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597821.1|), blast E-value=3e-30, identity=89.83% 
               

               
               532-644, 1393519 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN544549.1|), 
blast E-value=3e-30, identity=91.23% 
               

               
               532-644, 1477411 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894739.1|), 
blast E-value=3e-30, identity=91.23%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               532-644, CR552804 Normalized and Subtracted bovine embryonic and 
(emb|CR552804.2|), blast E-value=3e-30, identity=91.23% 
               

               
               532-653, xz91g05.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|AW339499.1|), blast E-value=2e-22, identity=86.89% 
               

               
               532-653, 7n64h11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BF115791.1|), blast E-value=2e-22, identity=86.89% 
               

               
               532-649, CT020019A10F03 Equine Articular Cartilage cDNA Library Equus 
(gb|CX597821.1|), blast E-value=3e-30, identity=89.83% 
               

               
               532-644, 1393519 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN544549.1|), 
blast E-value=3e-30, identity=91.23% 
               

               
               532-644, 1477411 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894739.1|), 
blast E-value=3e-30, identity=91.23%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002655, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002655, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-151, gnl|bosTau2|chr14 (11600793-11600950)
               

               
               1-151, gnl|Hg17|chr8 (57237483-57237333)
               

               
               1-151, gnl|Mm7|chr4 (3827156-3827002)
               


               
               188-792, gnl|bosTau2|chr14 (11601140-11601747)
               

               
               188-792, gnl|Hg17|chr8 (57237153-57236574)
               

               
               188-792, gnl|Mm7|chr4 (3826833-3826269)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr14 (11600793-11600950)
               

               
               1-151, gnl|Hg17|chr8 (57237483-57237333)
               

               
               1-151, gnl|Mm7|chr4 (3827156-3827002)
               


               
               188-792, gnl|bosTau2|chr14 (11601140-11601747)
               

               
               188-792, gnl|Hg17|chr8 (57237153-57236574)
               

               
               188-792, gnl|Mm7|chr4 (3826833-3826269)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               lin (0.145603)

	532-644, CR552804 Normalized and Subtracted bovine embryonic and (emb\|CR552804.2\|), blast E-value=3e-30, identity=91.23%
	532-653, xz91g05.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb\|AW339499.1\|), blast E-value=2e-22, identity=86.89%
	532-653, 7n64h11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb\|BF115791.1\|), blast E-value=2e-22, identity=86.89%
	532-649, CT020019A10F03 Equine Articular Cartilage cDNA Library Equus (gb\|CX597821.1\|), blast E-value=3e-30, identity=89.83%
	532-644, 1393519 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN544549.1\|), blast E-value=3e-30, identity=91.23%
	532-644, 1477411 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT894739.1\|), blast E-value=3e-30, identity=91.23%

	1-151, gnl\|bosTau2\|chr14 (11600793-11600950)
	1-151, gnl\|Hg17\|chr8 (57237483-57237333)
	1-151, gnl\|Mm7\|chr4 (3827156-3827002)

	188-792, gnl\|bosTau2\|chr14 (11601140-11601747)
	188-792, gnl\|Hg17\|chr8 (57237153-57236574)
	188-792, gnl\|Mm7\|chr4 (3826833-3826269)