Ss1.1-rpliv0107_d7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGAGAAATCTTGACTTAGAAAACGACCTGTCGTATATGAGGACCCATCAAGCTCTTC CTCGAGATGCTGTTATAGAAGATTTACGTTTACAAAATAAATACCTTCAAGAAAAAATTC ACACCTTAGAAAAACAGTTTTCAAAGGATGCCTATTCTAGGCCTTCAACTTCAGGGATAG AGTCGGATGACCATTATCAAAAAGAACAAGAGCTCCAGAGGGAAAACTTGAAGTTGTCAT CTGAAAATATTGAACTAAAATTTCAGCTTGAACAAGCAAATAAAGATTTGCCGAGATTAA AGAATCAGGTAAGAGATTTGAAGGAAATGTGTGAATTTCTTAAGAAAGAAAAAGCAGAAG TGGAGCGAAAACTTGGACATGTTAGAGGGTCTGGTAGGAGTGGAAAGACAATCCCAGAAC TAGAAAAAACCATTGGTTTAATGAAAAAAGTAGTTGAAAAAGTCCAAAGGGAAAATGAAC AGCTGAAAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGAGAAATCTTGACTTAGAAAACGACCTGTCGTATATGAGGACCCATCAAGCTCTTC CTCGAGATGCTGTTATAGAAGATTTACGTTTACAAAATAAATACCTTCAAGAAAAAATTC ACACCTTAGAAAAACAGTTTTCAAAGGATGCCTATTCTAGGCCTTCAACTTCAGGGATAG AGTCGGATGACCATTATCAAAAAGAACAAGAGCTCCAGAGGGAAAACTTGAAGTTGTCAT CTGAAAATATTGAACTAAAATTTCAGCTTGAACAAGCAAATAAAGATTTGCCGAGATTAA AGAATCAGGTAAGAGATTTGAAGGAAATGTGTGAATTTCTTAAGAAAGAAAAAGCAGAAG TGGAGCGAAAACTTGGACATGTTAGAGGGTCTGGTAGGAGTGGAAAGACAATCCCAGAAC TAGAAAAAACCATTGGTTTAATGAAAAAAGTAGTTGAAAAAGTCCAAAGGGAAAATGAAC AGCTGAAAAAAG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 65-167, + strand, RNAz p=0.822402 | |
| 168-302, + strand, RNAz p=0.97298 | |
| 389-492, - strand, RNAz p=0.781252 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 65-167, + strand, RNAz p=0.822402 | |
| 168-302, + strand, RNAz p=0.97298 | |
| 389-492, - strand, RNAz p=0.781252 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 42-167, gnl|bosTau2|chr10 (47316719-47316594) | |
| 42-167, gnl|canFam2|chr15 (32226168-32226349) | |
| 42-167, gnl|dasNov1|scaffold_87277 (7953-8174) | |
| 42-167, gnl|echTel1|scaffold_109303 (723-521) | |
| 42-167, gnl|galGal2|chr1 (39608220-39608385) | |
| 42-167, gnl|hg17|chr12 (86964710-86964905) | |
| 42-167, gnl|Hg17|chr12 (86964892-86964767) | |
| 42-167, gnl|loxAfr1|scaffold_13437 (64256-64064) | |
| 42-167, gnl|mm7|chr10 (100041223-100041040) | |
| 42-167, gnl|Mm7|chr10 (100041051-100041176) | |
| 42-167, gnl|monDom2|scaffold_36 (24375007-24375191) | |
| 42-167, gnl|oryCun1|scaffold_117676 (17397-17583) | |
| 42-167, gnl|panTro1|chr10 (89097702-89097897) | |
| 42-167, gnl|rheMac2|chr11 (89191943-89192141) | |
| 42-167, gnl|rn3|chr7 (38231846-38231663) | |
| 42-167, gnl|xenTro1|scaffold_237 (1234170-1233962) | |
| 168-302, gnl|bosTau2|chr10 (47312448-47312314) | |
| 168-302, gnl|Hg17|chr12 (86960360-86960226) | |
| 168-302, gnl|Mm7|chr10 (100044713-100044847) | |
| 389-492, gnl|bosTau2|chr10 (47310096-47309993) | |
| 389-492, gnl|Hg17|chr12 (86957240-86957137) | |
| 389-492, gnl|Mm7|chr10 (100047881-100047984) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-167, gnl|bosTau2|chr10 (47316719-47316594) | |
| 42-167, gnl|canFam2|chr15 (32226168-32226349) | |
| 42-167, gnl|dasNov1|scaffold_87277 (7953-8174) | |
| 42-167, gnl|echTel1|scaffold_109303 (723-521) | |
| 42-167, gnl|galGal2|chr1 (39608220-39608385) | |
| 42-167, gnl|hg17|chr12 (86964710-86964905) | |
| 42-167, gnl|Hg17|chr12 (86964892-86964767) | |
| 42-167, gnl|loxAfr1|scaffold_13437 (64256-64064) | |
| 42-167, gnl|mm7|chr10 (100041223-100041040) | |
| 42-167, gnl|Mm7|chr10 (100041051-100041176) | |
| 42-167, gnl|monDom2|scaffold_36 (24375007-24375191) | |
| 42-167, gnl|oryCun1|scaffold_117676 (17397-17583) | |
| 42-167, gnl|panTro1|chr10 (89097702-89097897) | |
| 42-167, gnl|rheMac2|chr11 (89191943-89192141) | |
| 42-167, gnl|rn3|chr7 (38231846-38231663) | |
| 42-167, gnl|xenTro1|scaffold_237 (1234170-1233962) | |
| 168-302, gnl|bosTau2|chr10 (47312448-47312314) | |
| 168-302, gnl|Hg17|chr12 (86960360-86960226) | |
| 168-302, gnl|Mm7|chr10 (100044713-100044847) | |
| 389-492, gnl|bosTau2|chr10 (47310096-47309993) | |
| 389-492, gnl|Hg17|chr12 (86957240-86957137) | |
| 389-492, gnl|Mm7|chr10 (100047881-100047984) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.292569) | |
| eje (0.0988338) |