Ss1.1-rpliv0108_p21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAGAGTTCAAGCATGATGACAAACTCAGTGAAGACAGTGGAGCCTTAATCCAGTGTGCC GTGCTGTACACAACCGTGAGTGGTCAGAGGAGACTTCGGATTCACAATCTGGGCTTGAAC TGCAGCTCCCAGTTAGCCGATCTCTATAAGAGCTGCGAGACAGACGCCCTTATCAACTTC TTCGCCAAATCAGGTAACACTTTGCTAGTCCTGGGGTGCAGTATACCTTGAGGTCAGAAG CTAGTTAATCAGACCGCCCACATGTTGGCCTGTTACTAGTAGCTGACAGATCCTGTGGTG GCACAGCCTTTTGGTGGGCAAATTCCGAATTTATAAGTCCTGCCAGTGGTTTGGCATTGG CTAATTTTACTCCACTATTTTGTTATGTATAGGTAGGGAAGTCATGGGGATGATAAATTC CAGAGACAGCTGGTCATGACCATGGGTGTGGCTGACTCTCAGCTTTTCTTCTACCCGCAG CTTCTGCCAATACACACCCTAGATGTCAAGAGTACAACGTTACCTGCTGCTATTCGTTGC TCTGAGGCCCGTCTCTCAGAAGAAGGAATATTCTTACTGGCTAATGGCCTAAATATGTTC TTATGGCTGGGAGTAAGTAGCCCACCAGAACTGATCCAAGGAATATTTAACGTGCCATCT TTTGCACATGTCAACACAGAGATGACACTGCTGCCTGAAGTGGGAAACCCATACTCTCAA ACACTCAGGATGATAATGGGTATTATCCAACAAAAGCGGCCATATTCAATGAAGCTCACA ATAGTAAAGCAGAAAGAACAGCCAGAAATGGTTTTCCGACAGTTCCTGGTCGAAGACAAA GGACTTTATGGAGGATCATCTTATGTGGATTTCCTTTGTTGTGTCCACAAGGAGATCTGT CAGCTGCTTAATTAACTGAACTCTCTATTATTGATACTGCATTTCTAAGGAGATGATCTC CTTCTTGGTGCCTAATTCTCCAAATGATAACAGACTAGTTTTTGATTTCTTGCTCATTTT CAGGATAGCTTTCCAAGATGGCATTTAGAACTTCAGCTTTGGTGCTCAGGTATAAAGCCA GTGAAGGTACAGTTGTATCTTAAAGGGAATAGTCTATTTCTCATTGCACAATTTTTAACT GTTAAAATGGATGCAGTTTGCATTTCATGAAGGTATAGTTTACAGAACTGTAAACATTCT CAGTTTTCTTTGCGCTAGACATATAAATTATTTTTCAAAATGTATAGATCTGGGGTAAAA AGTTGTCTTGGTTCCTCTCCCATTTGCAGTGAAGGAAAAAAAAAAACCCTTAATTTTACA TTATACTTTTTTTTTTTTTTTAAATCCATGTAACCCCATTGAACACATTTTTCAACTTAA GGTTTGCATAGCAAACTTTTAAATAACTTTGGAATCTATTTGGTAGAACAATTTGTGTTT TTTTTTTTTTTTCATAATTATATGTCGTGTATGTTAAAACTATTTTCCAGTTGTTCTCTT GTCTGTAAAAGTGTCTTTCTCAATATTCTTAATGGTTCCCTGTATCATTTTGACAGTTTC TACCTGTATATAGTGGATCTTAACCAGTATCAATAAATCACTTCATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAGAGTTCAAGCATGATGACAAACTCAGTGAAGACAGTGGAGCCTTAATCCAGTGTGCC GTGCTGTACACAACCGTGAGTGGTCAGAGGAGACTTCGGATTCACAATCTGGGCTTGAAC TGCAGCTCCCAGTTAGCCGATCTCTATAAGAGCTGCGAGACAGACGCCCTTATCAACTTC TTCGCCAAATCAGGTAACACTTTGCTAGTCCTGGGGTGCAGTATACCTTGAGGTCAGAAG CTAGTTAATCAGACCGCCCACATGTTGGCCTGTTACTAGTAGCTGACAGATCCTGTGGTG GCACAGCCTTTTGGTGGGCAAATTCCGAATTTATAAGTCCTGCCAGTGGTTTGGCATTGG CTAATTTTACTCCACTATTTTGTTATGTATAGGTAGGGAAGTCATGGGGATGATAAATTC CAGAGACAGCTGGTCATGACCATGGGTGTGGCTGACTCTCAGCTTTTCTTCTACCCGCAG CTTCTGCCAATACACACCCTAGATGTCAAGAGTACAACGTTACCTGCTGCTATTCGTTGC TCTGAGGCCCGTCTCTCAGAAGAAGGAATATTCTTACTGGCTAATGGCCTAAATATGTTC TTATGGCTGGGAGTAAGTAGCCCACCAGAACTGATCCAAGGAATATTTAACGTGCCATCT TTTGCACATGTCAACACAGAGATGACACTGCTGCCTGAAGTGGGAAACCCATACTCTCAA ACACTCAGGATGATAATGGGTATTATCCAACAAAAGCGGCCATATTCAATGAAGCTCACA ATAGTAAAGCAGAAAGAACAGCCAGAAATGGTTTTCCGACAGTTCCTGGTCGAAGACAAA GGACTTTATGGAGGATCATCTTATGTGGATTTCCTTTGTTGTGTCCACAAGGAGATCTGT CAGCTGCTTAATTAACTGAACTCTCTATTATTGATACTGCATTTCTAAGGAGATGATCTC CTTCTTGGTGCCTAATTCTCCAAATGATAACAGACTAGTTTTTGATTTCTTGCTCATTTT CAGGATAGCTTTCCAAGATGGCATTTAGAACTTCAGCTTTGGTGCTCAGGTATAAAGCCA GTGAAGGTACAGTTGTATCTTAAAGGGAATAGTCTATTTCTCATTGCACAATTTTTAACT GTTAAAATGGATGCAGTTTGCATTTCATGAAGGTATAGTTTACAGAACTGTAAACATTCT CAGTTTTCTTTGCGCTAGACATATAAATTATTTTTCAAAATGTATAGATCTGGGGTAAAA AGTTGTCTTGGTTCCTCTCCCATTTGCAGTGAAGGAAAAAAAAAAACCCTTAATTTTACA TTATACTTTTTTTTTTTTTTTAAATCCATGTAACCCCATTGAACACATTTTTCAACTTAA GGTTTGCATAGCAAACTTTTAAATAACTTTGGAATCTATTTGGTAGAACAATTTGTGTTT TTTTTTTTTTTTCATAATTATATGTCGTGTATGTTAAAACTATTTTCCAGTTGTTCTCTT GTCTGTAAAAGTGTCTTTCTCAATATTCTTAATGGTTCCCTGTATCATTTTGACAGTTTC TACCTGTATATAGTGGATCTTAACCAGTATCAATAAATCACTTCATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 52-336, gnl|bosTau2|chr7 (44662481-44662756) | |
| 52-336, gnl|Hg17|chr4 (120018048-120017786) | |
| 52-336, gnl|Mm7|chr3 (123193573-123193805) | |
| 493-684, gnl|bosTau2|chr7 (44670580-44670771) | |
| 493-684, gnl|canFam2|chr32 (40620558-40620772) | |
| 493-684, gnl|danRer3|chrNA (54500265-54500066) | |
| 493-684, gnl|dasNov1|scaffold_4083 (67670-67460) | |
| 493-684, gnl|echTel1|scaffold_321352 (136892-136695) | |
| 493-684, gnl|fr1|chrUn (136140821-136141020) | |
| 493-684, gnl|galGal2|chr4 (55498223-55498019) | |
| 493-684, gnl|hg17|chr4 (120010060-120010271) | |
| 493-684, gnl|Hg17|chr4 (120010265-120010074) | |
| 493-684, gnl|loxAfr1|scaffold_7556 (92850-93068) | |
| 493-684, gnl|mm7|chr3 (123199653-123199445) | |
| 493-684, gnl|Mm7|chr3 (123199449-123199640) | |
| 493-684, gnl|monDom2|scaffold_32 (8639309-8639102) | |
| 493-684, gnl|oryCun1|scaffold_210893 (42506-42716) | |
| 493-684, gnl|panTro1|chr3 (136483419-136483630) | |
| 493-684, gnl|rheMac2|chr5 (111314119-111314330) | |
| 493-684, gnl|rn3|chr2 (220049983-220049775) | |
| 493-684, gnl|tetNig1|chrUn_random (56585815-56585616) | |
| 493-684, gnl|xenTro1|scaffold_310 (319468-319679) | |
| 773-1608, gnl|bosTau2|chr7 (44677432-44678257) | |
| 773-1608, gnl|Hg17|chr4 (120002415-120001588) | |
| 773-1608, gnl|Mm7|chr3 (123203448-123204264) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-336, gnl|bosTau2|chr7 (44662481-44662756) | |
| 52-336, gnl|Hg17|chr4 (120018048-120017786) | |
| 52-336, gnl|Mm7|chr3 (123193573-123193805) | |
| 493-684, gnl|bosTau2|chr7 (44670580-44670771) | |
| 493-684, gnl|canFam2|chr32 (40620558-40620772) | |
| 493-684, gnl|danRer3|chrNA (54500265-54500066) | |
| 493-684, gnl|dasNov1|scaffold_4083 (67670-67460) | |
| 493-684, gnl|echTel1|scaffold_321352 (136892-136695) | |
| 493-684, gnl|fr1|chrUn (136140821-136141020) | |
| 493-684, gnl|galGal2|chr4 (55498223-55498019) | |
| 493-684, gnl|hg17|chr4 (120010060-120010271) | |
| 493-684, gnl|Hg17|chr4 (120010265-120010074) | |
| 493-684, gnl|loxAfr1|scaffold_7556 (92850-93068) | |
| 493-684, gnl|mm7|chr3 (123199653-123199445) | |
| 493-684, gnl|Mm7|chr3 (123199449-123199640) | |
| 493-684, gnl|monDom2|scaffold_32 (8639309-8639102) | |
| 493-684, gnl|oryCun1|scaffold_210893 (42506-42716) | |
| 493-684, gnl|panTro1|chr3 (136483419-136483630) | |
| 493-684, gnl|rheMac2|chr5 (111314119-111314330) | |
| 493-684, gnl|rn3|chr2 (220049983-220049775) | |
| 493-684, gnl|tetNig1|chrUn_random (56585815-56585616) | |
| 493-684, gnl|xenTro1|scaffold_310 (319468-319679) | |
| 773-1608, gnl|bosTau2|chr7 (44677432-44678257) | |
| 773-1608, gnl|Hg17|chr4 (120002415-120001588) | |
| 773-1608, gnl|Mm7|chr3 (123203448-123204264) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| pro (0.512033) | |
| elu (0.385356) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| elu (0.385356) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |