Non-Coding RNA Search

Ss1.1-rpliv0110_l3.5

Sequence:


               
               GAAGCATTCAGCTATCTACTAGGAAGAAAGAAAAGGCCAATTCATTTGAGCTTTGATGTT
GATGGACTGGATCCATTTTTCACACCGGCCACTGGCACACCAGTCCACGGAGGTCTGTCT
TATAGAGAAGGTATCTACATCACAGAAGAAATTTACAAAACAGGGCTACTGTCAGGAATA
GATATCATGGAAGTGAATCCATCTCTGGGGAAGACACCAGAAGAAGTAACTCGGACGGTG
AACACGGCAGTAGCACTGATCTTGGCTTGTTTTGGAGTTGCTCGGGAGGGTAACCATAAG
CCTATTGATTACCTGAAACCACCCAAGTAAATGGAAACATTACATGAAAATCTCACAGCT
GATGACATAAGTAGCAAATCTAACAGTTTAGTTAAACTTACAGTTATCTTCCCGATTGGA
CTTTCAGAAAAAATGTTTTGCCCTGGTAAATATGAGTACCATTAGTATAAACTGTATCAA
TTCCCTCTTGGTGTGAAAATCAAGATATGGAACTGCTAGCTTTTGTGAAATTACAAAACT
TATTATTCCCAATTTGGCAAAGGACTTATCTTTAGAAAGAAATATGCATTAATTCCAAAG
AAAAAATTGGTAGCATTAAATATAAACATACACCTCCATCAGCCCCCACACATAGAGTGG
GACTCTTGATATCAGGAGATAAAGCTACCCAACCTGGAAAGGACCATAGTTCCACATTCT
TCAAAGATGTAATCTCTAGAGACCTCTTTTTTTCTTTATCCCAAGATTCTGTTGTCCCTA
CAAAGGTTTCTAAACACATGCAAAATACACACACACACATTCTGCTTAAGACTACTATAA
ATATTTAAAAAGCTGCAGTGAAATCATTATCTCCCAAACACTGTAAGAATTTGTGAAGCT
ACTTAAACTCTTTGGCTCTGGTTCCTTCACCTGTAACATGGGTAATCACGACACTTGGGC
CATCTACAAGCTCATTAATGTTAGATGAGTTTGACTTTTTCTAAACTTCAAACATGATAT
TGGTTGATATTTTAGGCATGGCTTCTATTCAGATAGCCTTTCGGGAAATAGAGGAAAGAC
ATCAAACTACTTTGTTTCCAAGATATGCTAATTTAGACAGGGATTTGACCTAAAATTATC
TGTGGCTTCCAAGTGCCCCCTTTCATTCTTTGCAATGACAGTGTATCTCAATGGTTGAAT
TCCTAAACATCCTAAAAACTCATCTTGGCTCTGTTATATAGTGAAGAAAATAGACAAATG
AGAATAAACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCATTCAGCTATCTACTAGGAAGAAAGAAAAGGCCAATTCATTTGAGCTTTGATGTT
GATGGACTGGATCCATTTTTCACACCGGCCACTGGCACACCAGTCCACGGAGGTCTGTCT
TATAGAGAAGGTATCTACATCACAGAAGAAATTTACAAAACAGGGCTACTGTCAGGAATA
GATATCATGGAAGTGAATCCATCTCTGGGGAAGACACCAGAAGAAGTAACTCGGACGGTG
AACACGGCAGTAGCACTGATCTTGGCTTGTTTTGGAGTTGCTCGGGAGGGTAACCATAAG
CCTATTGATTACCTGAAACCACCCAAGTAAATGGAAACATTACATGAAAATCTCACAGCT
GATGACATAAGTAGCAAATCTAACAGTTTAGTTAAACTTACAGTTATCTTCCCGATTGGA
CTTTCAGAAAAAATGTTTTGCCCTGGTAAATATGAGTACCATTAGTATAAACTGTATCAA
TTCCCTCTTGGTGTGAAAATCAAGATATGGAACTGCTAGCTTTTGTGAAATTACAAAACT
TATTATTCCCAATTTGGCAAAGGACTTATCTTTAGAAAGAAATATGCATTAATTCCAAAG
AAAAAATTGGTAGCATTAAATATAAACATACACCTCCATCAGCCCCCACACATAGAGTGG
GACTCTTGATATCAGGAGATAAAGCTACCCAACCTGGAAAGGACCATAGTTCCACATTCT
TCAAAGATGTAATCTCTAGAGACCTCTTTTTTTCTTTATCCCAAGATTCTGTTGTCCCTA
CAAAGGTTTCTAAACACATGCAAAATACACACACACACATTCTGCTTAAGACTACTATAA
ATATTTAAAAAGCTGCAGTGAAATCATTATCTCCCAAACACTGTAAGAATTTGTGAAGCT
ACTTAAACTCTTTGGCTCTGGTTCCTTCACCTGTAACATGGGTAATCACGACACTTGGGC
CATCTACAAGCTCATTAATGTTAGATGAGTTTGACTTTTTCTAAACTTCAAACATGATAT
TGGTTGATATTTTAGGCATGGCTTCTATTCAGATAGCCTTTCGGGAAATAGAGGAAAGAC
ATCAAACTACTTTGTTTCCAAGATATGCTAATTTAGACAGGGATTTGACCTAAAATTATC
TGTGGCTTCCAAGTGCCCCCTTTCATTCTTTGCAATGACAGTGTATCTCAATGGTTGAAT
TCCTAAACATCCTAAAAACTCATCTTGGCTCTGTTATATAGTGAAGAAAATAGACAAATG
AGAATAAACTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7T1U6_ONCMY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7T1U6_ONCMY

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-164, gnl|bosTau2|chr9 (40017484-40017624)
               

               
               24-164, gnl|Hg17|chr6 (131946185-131946325)
               

               
               24-164, gnl|Mm7|chr10 (24668825-24668685)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-164, gnl|bosTau2|chr9 (40017484-40017624)
               

               
               24-164, gnl|Hg17|chr6 (131946185-131946325)
               

               
               24-164, gnl|Mm7|chr10 (24668825-24668685)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lun (0.451467)
               

               
               cbl (0.229595)
               

               
               liv (0.146284)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)
               

               
               cbl (0.229595)
               

               
               liv (0.146284)
               

               
               clu (0.119646)

	24-164, gnl\|bosTau2\|chr9 (40017484-40017624)
	24-164, gnl\|Hg17\|chr6 (131946185-131946325)
	24-164, gnl\|Mm7\|chr10 (24668825-24668685)