Non-Coding RNA Search

Ss1.1-rpliv0110_m9.5

Sequence:


               
               AAATATTTGAGTTATAAAAAATTCTCTGAGTATTTTCTGAGGGTTAGGCAATAGGGTTCC
TTTATAAGACAGAAAAACTACTGTCTGCATGCAAAAAATCTTCCTTGTGTGTACATTTGC
ATTTTGATAGGCATATTTTGAAGTCACCGTTTCCCATCAGTATGAAGTATCAACCATCTC
TATGTTCTCTAGCAAAGGAAAATTCTTAGTTTGATACAGCTTTCCTCTGTGTTTGATGTT
GGGAAATGTCCGCAAAGAAGGAGGCTCGGAAAGCTGGACACTTGAACCTTAAATGCAGCA
TAGTCAGCTTACCTTTCACTAAAAGAGAATCCGTCATTATTTGCCTCCTATTTATCCTCA
TGTTGAAAACCTAAATGTGTAGTTCCTTTTGTCCCCGGCATCCCAGAAGATGTAGCTTCA
GTCTAGCCTTTGCCATATTATTTATAGCTAAGAATTTGCTACATTTTGGTAGTCTGTTTT
GAAACTTGTATCTTAAAGATGGAGATCATGTCTATTTATTACACAGTGGGCTCTGTTTGC
TGCAGAAAAGAGTGAAACTTTTAAACTGCTTAGCACACACTTGCCAGTGAAATATACCTG
ACAGAGCAGAGGTTCTAACTTTGGCTCTACTGACTTTTAATAATGGTAAGAAACCGTGAC
TTTTGTTTGTTTACATGCTGTTTACAATGGCATCATTTTTTAAATATATACAACAATTGA
GATATTTATTGCATACTATTTTAAAGATGTTTTATGTGTTTTCACCTTTGGAATATATTG
TTACCGTTCCTTACACCGATACTTTGGGTGGCTTTGTTAATGTACCTACTAATTTTTATG
ACTACTAAGTGACCAGTTTTCCGTGCCTTTTATTGTGGGATGCATGACTATGTATTTATT
GTATGGAAGTCACGGATGCGTGTATTTTTGTACTTTGCCGAGAGTAATGGTTGATCTCGA
TGGACGTGATGATGAGAGATGCCTTTCCCAGGGGGCACTACCTTGAGATCGTCCTTCTCA
AATAAAAAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATTTGAGTTATAAAAAATTCTCTGAGTATTTTCTGAGGGTTAGGCAATAGGGTTCC
TTTATAAGACAGAAAAACTACTGTCTGCATGCAAAAAATCTTCCTTGTGTGTACATTTGC
ATTTTGATAGGCATATTTTGAAGTCACCGTTTCCCATCAGTATGAAGTATCAACCATCTC
TATGTTCTCTAGCAAAGGAAAATTCTTAGTTTGATACAGCTTTCCTCTGTGTTTGATGTT
GGGAAATGTCCGCAAAGAAGGAGGCTCGGAAAGCTGGACACTTGAACCTTAAATGCAGCA
TAGTCAGCTTACCTTTCACTAAAAGAGAATCCGTCATTATTTGCCTCCTATTTATCCTCA
TGTTGAAAACCTAAATGTGTAGTTCCTTTTGTCCCCGGCATCCCAGAAGATGTAGCTTCA
GTCTAGCCTTTGCCATATTATTTATAGCTAAGAATTTGCTACATTTTGGTAGTCTGTTTT
GAAACTTGTATCTTAAAGATGGAGATCATGTCTATTTATTACACAGTGGGCTCTGTTTGC
TGCAGAAAAGAGTGAAACTTTTAAACTGCTTAGCACACACTTGCCAGTGAAATATACCTG
ACAGAGCAGAGGTTCTAACTTTGGCTCTACTGACTTTTAATAATGGTAAGAAACCGTGAC
TTTTGTTTGTTTACATGCTGTTTACAATGGCATCATTTTTTAAATATATACAACAATTGA
GATATTTATTGCATACTATTTTAAAGATGTTTTATGTGTTTTCACCTTTGGAATATATTG
TTACCGTTCCTTACACCGATACTTTGGGTGGCTTTGTTAATGTACCTACTAATTTTTATG
ACTACTAAGTGACCAGTTTTCCGTGCCTTTTATTGTGGGATGCATGACTATGTATTTATT
GTATGGAAGTCACGGATGCGTGTATTTTTGTACTTTGCCGAGAGTAATGGTTGATCTCGA
TGGACGTGATGATGAGAGATGCCTTTCCCAGGGGGCACTACCTTGAGATCGTCCTTCTCA
AATAAAAAGAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               536-695, - strand, RNAz p=0.77223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-695, - strand, RNAz p=0.77223

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1030, gnl|bosTau2|chr12 (3753534-3754561)
               

               
               1-1030, gnl|Hg17|chr13 (41713965-41715017)
               

               
               1-1030, gnl|Mm7|chr14 (73241120-73240053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1030, gnl|bosTau2|chr12 (3753534-3754561)
               

               
               1-1030, gnl|Hg17|chr13 (41713965-41715017)
               

               
               1-1030, gnl|Mm7|chr14 (73241120-73240053)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               liv (0.292569)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1-1030, gnl\|bosTau2\|chr12 (3753534-3754561)
	1-1030, gnl\|Hg17\|chr13 (41713965-41715017)
	1-1030, gnl\|Mm7\|chr14 (73241120-73240053)