Non-Coding RNA Search

Ss1.1-rpliv0111_a1.5

Sequence:


               
               AGGCGAGAGTGCCCTGCGGAAGCGCATTCGAGAGGACAGGAGAGCCGGCACAGCTCAGAA
GGTGCAGCAGATGAAGCAGAGGCTCAACGAGACCGAGCGAAAGAGGAAAAGGTGGTTATA
TTGGCAACCTATTCTCACTAAGATGGGGTTTGTGTCGGTCATTCTGGTTGGCGCTTTTGT
TGGCTGGACACTGTTTTTTCAGCAAAATGTCCTATGAATAATTAATTTTGCCACAAGCTT
CAGCACTGTTAGCTGACGGTGTTGCGTGAATCACAGGGGTCCGTCTGTGTGCAGACGGTG
CGGAGGCTGGATGCCCACAAGAGGTGGTGGGTCCTGGACCCACTGCCCCAGATAAAGACT
TGATGCTTATGCAGAACTGGCTCATTCTCAGCTCTATCTGTGTACGTTAAGCCTAATGTC
CTTTATCACAAGGATTCGGTTTTGGAGGCTGTCTGGATTTTAACCTGCACTTGATAAAAG
CAATAAATATTGTGCTCTTATCTACATTATTACTGGAAAGAAAATGACCTTTAAGTAACG
TGTGTTATGTATAATGTACTATTGACATGGGCATCAACATTTTATATTCTTAACCATTTC
AGGGTAAATATATTTTATAAGTACCTGTTTAATCTTACTTTTGTAGTTAAATGTACTTTT
TTAAAAGCTCAATTTGAAAATTCTGTTACCATAAAAAAATAAATTGTGTGTTGATTCAAT
TGTATTGGATAAGTTTTCCTAAAGAGAGGTTTGATATGAGCAGTTAGAACTCTGAATAAG
CAGTTTTTACTATATATTTGCATTTCTTTTATGTTTTACAGTTTCCTAATTTTAAAAAGA
AAAACAAACAAAATTTTTCTCTTTAAAAAAAATATCTTTGAAGGGTAATTCTCCTCACTG
GCATAGTCAGGTAACAGTTGGTCAAGACTTTGTTAAAAAAAAACACAACAAAAAAACTGG
TTTTGTAAACCCCATTATTAATACTGTTTATTTTTCATGAAAATTTCAATGTAATTACCC
TAATTTATAATTGGGGTTATATCATGATGTAGGAAATAAAAATAAGGAGCAGCGTTTTCT
TATCCATGTTTTCAGTTTACTAGACTGAACTTTTGAAGTAAAAAAATTTTTAAGTTCTTT
CCACTTCAATAAATAGTATAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGAGAGTGCCCTGCGGAAGCGCATTCGAGAGGACAGGAGAGCCGGCACAGCTCAGAA
GGTGCAGCAGATGAAGCAGAGGCTCAACGAGACCGAGCGAAAGAGGAAAAGGTGGTTATA
TTGGCAACCTATTCTCACTAAGATGGGGTTTGTGTCGGTCATTCTGGTTGGCGCTTTTGT
TGGCTGGACACTGTTTTTTCAGCAAAATGTCCTATGAATAATTAATTTTGCCACAAGCTT
CAGCACTGTTAGCTGACGGTGTTGCGTGAATCACAGGGGTCCGTCTGTGTGCAGACGGTG
CGGAGGCTGGATGCCCACAAGAGGTGGTGGGTCCTGGACCCACTGCCCCAGATAAAGACT
TGATGCTTATGCAGAACTGGCTCATTCTCAGCTCTATCTGTGTACGTTAAGCCTAATGTC
CTTTATCACAAGGATTCGGTTTTGGAGGCTGTCTGGATTTTAACCTGCACTTGATAAAAG
CAATAAATATTGTGCTCTTATCTACATTATTACTGGAAAGAAAATGACCTTTAAGTAACG
TGTGTTATGTATAATGTACTATTGACATGGGCATCAACATTTTATATTCTTAACCATTTC
AGGGTAAATATATTTTATAAGTACCTGTTTAATCTTACTTTTGTAGTTAAATGTACTTTT
TTAAAAGCTCAATTTGAAAATTCTGTTACCATAAAAAAATAAATTGTGTGTTGATTCAAT
TGTATTGGATAAGTTTTCCTAAAGAGAGGTTTGATATGAGCAGTTAGAACTCTGAATAAG
CAGTTTTTACTATATATTTGCATTTCTTTTATGTTTTACAGTTTCCTAATTTTAAAAAGA
AAAACAAACAAAATTTTTCTCTTTAAAAAAAATATCTTTGAAGGGTAATTCTCCTCACTG
GCATAGTCAGGTAACAGTTGGTCAAGACTTTGTTAAAAAAAAACACAACAAAAAAACTGG
TTTTGTAAACCCCATTATTAATACTGTTTATTTTTCATGAAAATTTCAATGTAATTACCC
TAATTTATAATTGGGGTTATATCATGATGTAGGAAATAAAAATAAGGAGCAGCGTTTTCT
TATCCATGTTTTCAGTTTACTAGACTGAACTTTTGAAGTAAAAAAATTTTTAAGTTCTTT
CCACTTCAATAAATAGTATAATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1054839|emb|CAA63406.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1054839|emb|CAA63406.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-288, gnl|bosTau2|chr24 (31134428-31134147)
               

               
               8-288, gnl|Hg17|chr18 (12784486-12784204)
               

               
               8-288, gnl|Mm7|chr18 (68065065-68064788)
               


               
               419-1164, gnl|bosTau2|chr24 (31133948-31133210)
               

               
               419-1164, gnl|Hg17|chr18 (12783970-12783260)
               

               
               419-1164, gnl|Mm7|chr18 (68064583-68063516)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-288, gnl|bosTau2|chr24 (31134428-31134147)
               

               
               8-288, gnl|Hg17|chr18 (12784486-12784204)
               

               
               8-288, gnl|Mm7|chr18 (68065065-68064788)
               


               
               419-1164, gnl|bosTau2|chr24 (31133948-31133210)
               

               
               419-1164, gnl|Hg17|chr18 (12783970-12783260)
               

               
               419-1164, gnl|Mm7|chr18 (68064583-68063516)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	8-288, gnl\|bosTau2\|chr24 (31134428-31134147)
	8-288, gnl\|Hg17\|chr18 (12784486-12784204)
	8-288, gnl\|Mm7\|chr18 (68065065-68064788)

	419-1164, gnl\|bosTau2\|chr24 (31133948-31133210)
	419-1164, gnl\|Hg17\|chr18 (12783970-12783260)
	419-1164, gnl\|Mm7\|chr18 (68064583-68063516)