Non-Coding RNA Search

Ss1.1-rpliv0112_i19.5.5

Sequence:


               
               TTCTTTAAGGTTGTAGATAGCCTGGTGATTTTAGAAGGGTTTGGTGATTCTCCTTGGCAG
AAGTTTATGGGCATCTCTTCAGGTATTCAGTAGCACGGCTTTTGGGGTCGTAATCTCAGG
TTTGATGCCTGTTTCCCCCGAAGCAGGAACATTTTCTTGATTAATACAGGTGGAAATCTG
GGGAGGTTTTCTTCTTACAGAAGATGCATGCATGGAGAGAGAATTTGAGGCATTTCTTCT
AAAGAATCATACCTGCTGAACAGAAACTTGGACAGTTCTTTGTAATTCACTGGTTTGCGG
TTTAGCCTGTCCTAATTACAAGAGGTAACGGTATTTGTCAAGCCTTTGTAAGACTGGATT
TTTCATAGTAGAAACTCATCTTCTACAATGCAGTTATTATAATTGAAATGTTACCCTAAA
ATTGGATGATTTACAAAAACCAGTAAGATGGATTTTACCTATCAACTGTTTTTAAAAAAT
AGGAGCATATTCTGTAATATTTGCTGGTAGCAATTGCTGTAAAACAAGTGATGAGTTGTT
TTATTGAAAAGATTGAGTCTCGGAACAGGCTACTTCTACTGTTTATGTCAGAGAGAAAAA
GGTGTGTGTGGTTCTCTTTCAGATAATTCAGTTCTTAAAATTCTTAAAATCATCATAAGA
ATTTATTTGAAGAGATTGCTTTTAAAAAGTTCAAAATTTTATGTAGAGGTAGCTCTTGTT
TTACCCCGTTGATAGATAGTGCCTTCTTAGCTATAACAAAAGCCCAATGAGGCCAGACAA
TCCCAAGTAAAGAATACATCTTTTAGAGTCTGATATTCCCTTCCTAGTACTATTGGAGAT
GATGTTGCTTTGATTTATTCATAGAGTATTTTAATTGTAGGAACTCTTGAAGAAAATGGT
TGGTTTCTCCTTAACCTGGTTGGTTAAAGTTGCATTTTATTAAAATTGGGTAAAACTATA
ATCATGAAAACTGGGTATTTGTATGTAACTGCCCATGTTCTTGTAAAAAGCTATGTCATA
TGCAGATGATAAAGACCAAACAATGGCTGCACTGTAGGTCCGCTTCTTACTTATACTTGT
TCTGCTTCTGTTTATGTTGTAGACAATGAAATTCTAGCAACATGCTTCAATTCTGTTATC
TTTTTGATACTTATGAAAATGTATTAGGTTTTACTATATTGTGCTTTTCAAAGCATAACT
CTTAAGAACTTTGTTTTTGCATATCGTTTGCTAATACTTTATTTTAATAAATCTCAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTAAGGTTGTAGATAGCCTGGTGATTTTAGAAGGGTTTGGTGATTCTCCTTGGCAG
AAGTTTATGGGCATCTCTTCAGGTATTCAGTAGCACGGCTTTTGGGGTCGTAATCTCAGG
TTTGATGCCTGTTTCCCCCGAAGCAGGAACATTTTCTTGATTAATACAGGTGGAAATCTG
GGGAGGTTTTCTTCTTACAGAAGATGCATGCATGGAGAGAGAATTTGAGGCATTTCTTCT
AAAGAATCATACCTGCTGAACAGAAACTTGGACAGTTCTTTGTAATTCACTGGTTTGCGG
TTTAGCCTGTCCTAATTACAAGAGGTAACGGTATTTGTCAAGCCTTTGTAAGACTGGATT
TTTCATAGTAGAAACTCATCTTCTACAATGCAGTTATTATAATTGAAATGTTACCCTAAA
ATTGGATGATTTACAAAAACCAGTAAGATGGATTTTACCTATCAACTGTTTTTAAAAAAT
AGGAGCATATTCTGTAATATTTGCTGGTAGCAATTGCTGTAAAACAAGTGATGAGTTGTT
TTATTGAAAAGATTGAGTCTCGGAACAGGCTACTTCTACTGTTTATGTCAGAGAGAAAAA
GGTGTGTGTGGTTCTCTTTCAGATAATTCAGTTCTTAAAATTCTTAAAATCATCATAAGA
ATTTATTTGAAGAGATTGCTTTTAAAAAGTTCAAAATTTTATGTAGAGGTAGCTCTTGTT
TTACCCCGTTGATAGATAGTGCCTTCTTAGCTATAACAAAAGCCCAATGAGGCCAGACAA
TCCCAAGTAAAGAATACATCTTTTAGAGTCTGATATTCCCTTCCTAGTACTATTGGAGAT
GATGTTGCTTTGATTTATTCATAGAGTATTTTAATTGTAGGAACTCTTGAAGAAAATGGT
TGGTTTCTCCTTAACCTGGTTGGTTAAAGTTGCATTTTATTAAAATTGGGTAAAACTATA
ATCATGAAAACTGGGTATTTGTATGTAACTGCCCATGTTCTTGTAAAAAGCTATGTCATA
TGCAGATGATAAAGACCAAACAATGGCTGCACTGTAGGTCCGCTTCTTACTTATACTTGT
TCTGCTTCTGTTTATGTTGTAGACAATGAAATTCTAGCAACATGCTTCAATTCTGTTATC
TTTTTGATACTTATGAAAATGTATTAGGTTTTACTATATTGTGCTTTTCAAAGCATAACT
CTTAAGAACTTTGTTTTTGCATATCGTTTGCTAATACTTTATTTTAATAAATCTCAAAAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1031-1260, gnl|bosTau2|chr4 (45899294-45899066)
               

               
               1031-1260, gnl|Hg17|chr5 (135546089-135546317)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1031-1260, gnl|bosTau2|chr4 (45899294-45899066)
               

               
               1031-1260, gnl|Hg17|chr5 (135546089-135546317)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               lin (0.582411)
               

               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	1031-1260, gnl\|bosTau2\|chr4 (45899294-45899066)
	1031-1260, gnl\|Hg17\|chr5 (135546089-135546317)

	lin (0.582411)
	pro (0.512033)
	vin (0.332557)
	kid (0.259471)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	bfe (0.149858)
	liv (0.146284)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)