Non-Coding RNA Search

Ss1.1-rpliv0113_d8.5

Sequence:


               
               AAAAAAAAAAAAAAACTGTATTAAGCATGTAAAACATGTACGATCGCAGAATTTTAGTAT
GTTTTGTATAAAAATATTTTTCATTACGGAGACTAGACGTGAACAGAGAAATACACGAGT
GTGACTATACAAATTGTAAAGCAGATACTATAATATTTCCTTTTATTTTAGTGTTATTTA
GCTTTATTACAGATTTCTATTTTTGTCAAAACCCTCATGGTTCCTTTCGAGATCTTTTTT
GCCAAAACATTTTGATACTGTAGCATTGTACATTTGACCGTAGTGTGCTAGACAATAAAG
CCAATGAACTTCTGCACAAGCCAACACAAGGGCACACGTAGAAGGCAAATTATCGACCTT
ACTGCACTGCCGTGGAAATCGTGTATAATGAGTTGCCAGCCCCAGCAAGCTCGTTTTCTT
TCCTTTTTTTCTCTTTTCTTTTTTAACATATTGGGATTCTATAGTTGTTTTCTTTGCAGT
ATCTAAATCCTTCCTTTGTTGTCCGAGACCTGGTAACCCACACTATTGCATTGTGGATTT
TAAAATGGACACTTCTGTACGGTTCTGTAAACTGATCAATTTTTGTAAATATATAAATAG
ACACCAAAAATACTGTATGGGACAGCACATAGAGTAGTTTTCCCACACCAAAGTTAATTT
TTAGGCATGCTTTAAACATATATATTGGGATGGGCAGAAATGGGACTTCCCGGACATTTT
TAAAAAGCAACCAGTTTGCACAGCTAGAGCGTTTTTGTAAATAAATGTATTTGTATACCA
CAGTCATGTAATATACAGAACTATAAGCAGAGACTTTGCAAAACTAAATAAAGGGCTGCA
TGCTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAACTGTATTAAGCATGTAAAACATGTACGATCGCAGAATTTTAGTAT
GTTTTGTATAAAAATATTTTTCATTACGGAGACTAGACGTGAACAGAGAAATACACGAGT
GTGACTATACAAATTGTAAAGCAGATACTATAATATTTCCTTTTATTTTAGTGTTATTTA
GCTTTATTACAGATTTCTATTTTTGTCAAAACCCTCATGGTTCCTTTCGAGATCTTTTTT
GCCAAAACATTTTGATACTGTAGCATTGTACATTTGACCGTAGTGTGCTAGACAATAAAG
CCAATGAACTTCTGCACAAGCCAACACAAGGGCACACGTAGAAGGCAAATTATCGACCTT
ACTGCACTGCCGTGGAAATCGTGTATAATGAGTTGCCAGCCCCAGCAAGCTCGTTTTCTT
TCCTTTTTTTCTCTTTTCTTTTTTAACATATTGGGATTCTATAGTTGTTTTCTTTGCAGT
ATCTAAATCCTTCCTTTGTTGTCCGAGACCTGGTAACCCACACTATTGCATTGTGGATTT
TAAAATGGACACTTCTGTACGGTTCTGTAAACTGATCAATTTTTGTAAATATATAAATAG
ACACCAAAAATACTGTATGGGACAGCACATAGAGTAGTTTTCCCACACCAAAGTTAATTT
TTAGGCATGCTTTAAACATATATATTGGGATGGGCAGAAATGGGACTTCCCGGACATTTT
TAAAAAGCAACCAGTTTGCACAGCTAGAGCGTTTTTGTAAATAAATGTATTTGTATACCA
CAGTCATGTAATATACAGAACTATAAGCAGAGACTTTGCAAAACTAAATAAAGGGCTGCA
TGCTTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-846, gnl|bosTau2|chr13 (11810860-11810030)
               

               
               6-846, gnl|Hg17|chr10 (24875552-24876420)
               

               
               6-846, gnl|Mm7|chr2 (20874664-20875510)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-846, gnl|bosTau2|chr13 (11810860-11810030)
               

               
               6-846, gnl|Hg17|chr10 (24875552-24876420)
               

               
               6-846, gnl|Mm7|chr2 (20874664-20875510)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               liv (0.585137)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               rec (0.346141)
               

               
               isp (0.300752)
               

               
               pan (0.23596)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               rec (0.346141)
               

               
               isp (0.300752)
               

               
               pan (0.23596)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	6-846, gnl\|bosTau2\|chr13 (11810860-11810030)
	6-846, gnl\|Hg17\|chr10 (24875552-24876420)
	6-846, gnl\|Mm7\|chr2 (20874664-20875510)

	liv (0.585137)
	lyg (0.399308)
	kid (0.389206)
	rec (0.346141)
	isp (0.300752)
	pan (0.23596)
	nms (0.213858)
	ton (0.1755)
	lun (0.150489)
	lin (0.145603)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)