Non-Coding RNA Search

Ss1.1-rpliv0113_h22.5

Sequence:


               
               ATTTATTAGCTCTCTTCAAGAGATTGAAGCACAATAATTTTCCTGTAACAGTTCTTATCC
AAGTGCTGCTAATCTGTCATGCAAATAATGAAGCTATTTGGTTGCCTATCTAGCTATTCA
CAAATCACTGTAATCCTTAAGAAGTAGTCTTGTTGCTCATTTGTATTAAATTTTGGATAT
TGTGAGTTAATACTTTAAAACAAAATCCATTAACTCAGCTCTGTGAGACAACAAACCGTT
TGGATTCATTAGTTTTATATGTGTTCTCAGTAGAAAAAATTTCGAAGGGGCTATTTACTA
CCAATGACTAAGGGGACAAATTATATTGTCAATATCATTTGACTTGAACAGTTGTGGTAT
TGTAAAAGTCTGTCCTGTTTCTAAATTGCTTAAGCCATACACAATCCTAAGGATGTTTTC
CTATTGTGTTTCCTCTTCAGCAGCCTTTTTCCGCTTTGTCTATTATGGATAATACTTCAT
AGATTTTAGAAATGGAGACGTTATTGAAACATTTTATTTTCTTGATCATCGCTTTTGACT
CTTGTATGTGATTCGTCGTAAAGGGATAGCAAGCCTTTCACTACTTCACTTAACGAATTT
CAGAGTAACACTGTGATTCTGCAGAGCAGATTCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATTAGCTCTCTTCAAGAGATTGAAGCACAATAATTTTCCTGTAACAGTTCTTATCC
AAGTGCTGCTAATCTGTCATGCAAATAATGAAGCTATTTGGTTGCCTATCTAGCTATTCA
CAAATCACTGTAATCCTTAAGAAGTAGTCTTGTTGCTCATTTGTATTAAATTTTGGATAT
TGTGAGTTAATACTTTAAAACAAAATCCATTAACTCAGCTCTGTGAGACAACAAACCGTT
TGGATTCATTAGTTTTATATGTGTTCTCAGTAGAAAAAATTTCGAAGGGGCTATTTACTA
CCAATGACTAAGGGGACAAATTATATTGTCAATATCATTTGACTTGAACAGTTGTGGTAT
TGTAAAAGTCTGTCCTGTTTCTAAATTGCTTAAGCCATACACAATCCTAAGGATGTTTTC
CTATTGTGTTTCCTCTTCAGCAGCCTTTTTCCGCTTTGTCTATTATGGATAATACTTCAT
AGATTTTAGAAATGGAGACGTTATTGAAACATTTTATTTTCTTGATCATCGCTTTTGACT
CTTGTATGTGATTCGTCGTAAAGGGATAGCAAGCCTTTCACTACTTCACTTAACGAATTT
CAGAGTAACACTGTGATTCTGCAGAGCAGATTCAGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr11 (73227386-73226746)
               

               
               1-636, gnl|Hg17|chr9 (124785358-124784728)
               

               
               1-636, gnl|Mm7|chr2 (39074420-39073821)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr11 (73227386-73226746)
               

               
               1-636, gnl|Hg17|chr9 (124785358-124784728)
               

               
               1-636, gnl|Mm7|chr2 (39074420-39073821)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

	1-636, gnl\|bosTau2\|chr11 (73227386-73226746)
	1-636, gnl\|Hg17\|chr9 (124785358-124784728)
	1-636, gnl\|Mm7\|chr2 (39074420-39073821)

	liv (0.292569)
	ret (0.257467)
	mgm (0.180343)
	fco (0.157208)
	tra (0.123092)