Non-Coding RNA Search

Ss1.1-rpliv0113_i23.5

Sequence:


               
               AATCATCACAAAGTCCATACTGGGGATGCATTTTATGAAAACGATGAGAGTGGTAAGAAC
ATCAAGGAACTGTCAGAGGAAAGAAGTTCTGCAAGATGATGTTTTAAGAACAGTCATGTG
CAGCCTGAGTTCTTGTAACTGTCAGGTCTGATAGAGAAAATATTTTGGGTTAGTGGGTGT
TGAAGCAGTTATTTTCATCAGACCGCACAACAGAGAACCCTTCTGAGTGGTGCAGTAAGG
GCGGCTGCATTCAGAACTTGACATTTATCAGATGTCACTTGGGAGATGGTACCTAGAAAG
GAAAAGAGTTTGGTCTGGCCTTTAACGGAAGTGTGAGGATGGGCTGTCAGAATCAATATT
CACTAGAATGTGAGCTCCATGAGGCAGGGACTTGGCAGCTGGATCTACACAACCTTAACC
TTGAATAGCGCAAATGGGTATGCCCAGTACTTGTATGTTAAATAAACCAAAAGGGGGAAG
TGTACAGTATGTGAAAATTGTATCCAGAGGAGGAAAACTGCAAAGTGAAATTGATTCAGG
AAATGAACATTTATTGAAATGCAGAAAACATTCAATATTACAATCTGCAGTATTAATATA
AGTGTGGGGTGTTAGCCTATTGTAATTGGCTCCTTGCCTTCCAGAGCCTCTGTTCTCAAG
TTGGGTTATTCAAGGCCTTCTCTAGTTTTCCAAGGATTGTGTCCAGTTTAAATTGAACTA
TTTTGTGATTTTTTTTTCTGACAGTACAAATTGAAAAAATGTTACTACTGTTGCAACAAT
AGGTGACTGCATATTATACAATTGATTTTTTTTTGTCTTTCAATGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCATCACAAAGTCCATACTGGGGATGCATTTTATGAAAACGATGAGAGTGGTAAGAAC
ATCAAGGAACTGTCAGAGGAAAGAAGTTCTGCAAGATGATGTTTTAAGAACAGTCATGTG
CAGCCTGAGTTCTTGTAACTGTCAGGTCTGATAGAGAAAATATTTTGGGTTAGTGGGTGT
TGAAGCAGTTATTTTCATCAGACCGCACAACAGAGAACCCTTCTGAGTGGTGCAGTAAGG
GCGGCTGCATTCAGAACTTGACATTTATCAGATGTCACTTGGGAGATGGTACCTAGAAAG
GAAAAGAGTTTGGTCTGGCCTTTAACGGAAGTGTGAGGATGGGCTGTCAGAATCAATATT
CACTAGAATGTGAGCTCCATGAGGCAGGGACTTGGCAGCTGGATCTACACAACCTTAACC
TTGAATAGCGCAAATGGGTATGCCCAGTACTTGTATGTTAAATAAACCAAAAGGGGGAAG
TGTACAGTATGTGAAAATTGTATCCAGAGGAGGAAAACTGCAAAGTGAAATTGATTCAGG
AAATGAACATTTATTGAAATGCAGAAAACATTCAATATTACAATCTGCAGTATTAATATA
AGTGTGGGGTGTTAGCCTATTGTAATTGGCTCCTTGCCTTCCAGAGCCTCTGTTCTCAAG
TTGGGTTATTCAAGGCCTTCTCTAGTTTTCCAAGGATTGTGTCCAGTTTAAATTGAACTA
TTTTGTGATTTTTTTTTCTGACAGTACAAATTGAAAAAATGTTACTACTGTTGCAACAAT
AGGTGACTGCATATTATACAATTGATTTTTTTTTGTCTTTCAATGTTA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               3-828, gnl|bosTau2|chr14 (25860760-25861583)
               

               
               3-828, gnl|Hg17|chr19 (49354016-49355579)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-828, gnl|bosTau2|chr14 (25860760-25861583)
               

               
               3-828, gnl|Hg17|chr19 (49354016-49355579)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	3-828, gnl\|bosTau2\|chr14 (25860760-25861583)
	3-828, gnl\|Hg17\|chr19 (49354016-49355579)