Non-Coding RNA Search

Ss1.1-rpliv0113_j8.5

Sequence:


               
               CTTGAATGCTTATTTTAAAATGACAGTGGAAACTTTTTTTCCTCTAAGTGCCAGTATTCC
CTGAGTTTTGGTTTTTGAACTAGCAATGCCTGTGAAAAAGAAACTGAACACCTGAGATTT
CTGTCTTGGGGTTTTTGGTGCATGCAGTCAATTACTTCCTATTTTTCTTACCAATTGTGG
ACTTTAGTGTGAAACAAATTAATGAACCTTTCAAATCATCCCTAGTCTATGTTTTATCTG
GTCACATACATGGATCAATTACTAATTATAACTTCACTTGGAATTTCAAGATTGGTTTTA
TTGAAACATTGAGGGAACACGAATTTATGGACTTCCTATAGATTCATCTCGTATGCATCA
TGTCCTGTAGTTTCAGTTACCCTTGTATGAATGTAAGGTTACACTGTTCACAAAGGTTTT
CTTCTTTCCACTGCTATTTGTCATGGTCATGTTTCCAAAAATATTATATTTTTTCTATAA
AAAGGGAAAAAATGGAAAAAAATACAAGGCAATGGAAAATACTAAAAGGCCATTTACTTT
CTGCATTAGATAAATTCCTATAATACTCTGAATAGCTTCTCCTGTTAAGGAAGACCCAGT
ATGTAATGAGGATTATAATAACCATTTTGGGGCTATATTTACATGCTACTAAATTTTTGT
AATGATTGAAAAAAATTTAACATGTATAAAAAATTTTCATAGGAATTAAATATAGTCTCC
CTGTGTCAGATTGCTCTTTCTTAGCATAACTTTAAATCTTTTCTTGAACTTCAGTCTTTG
AAAGTAGTTTTAATTCTACTGATAGTGATGTTAAAGATTATTTGGGCCAGTTAGCTTAGT
AGGTTACAAAGGCCAGGCTTTGTGTGAACCTTTGAGCGCCACTGAGAGCTTCACAGGTGG
ACTGCATTCCTGTGATCCTCCAGTGTTGTTATGCCTGGGCTGGTCAGGAATGGCGACTAG
GAGAGAGTTTGGTTAGCTCAGCAAGGTACATTGTCACCATGTGGTAGTCCTACTCAGGAA
CATCACTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAATGCTTATTTTAAAATGACAGTGGAAACTTTTTTTCCTCTAAGTGCCAGTATTCC
CTGAGTTTTGGTTTTTGAACTAGCAATGCCTGTGAAAAAGAAACTGAACACCTGAGATTT
CTGTCTTGGGGTTTTTGGTGCATGCAGTCAATTACTTCCTATTTTTCTTACCAATTGTGG
ACTTTAGTGTGAAACAAATTAATGAACCTTTCAAATCATCCCTAGTCTATGTTTTATCTG
GTCACATACATGGATCAATTACTAATTATAACTTCACTTGGAATTTCAAGATTGGTTTTA
TTGAAACATTGAGGGAACACGAATTTATGGACTTCCTATAGATTCATCTCGTATGCATCA
TGTCCTGTAGTTTCAGTTACCCTTGTATGAATGTAAGGTTACACTGTTCACAAAGGTTTT
CTTCTTTCCACTGCTATTTGTCATGGTCATGTTTCCAAAAATATTATATTTTTTCTATAA
AAAGGGAAAAAATGGAAAAAAATACAAGGCAATGGAAAATACTAAAAGGCCATTTACTTT
CTGCATTAGATAAATTCCTATAATACTCTGAATAGCTTCTCCTGTTAAGGAAGACCCAGT
ATGTAATGAGGATTATAATAACCATTTTGGGGCTATATTTACATGCTACTAAATTTTTGT
AATGATTGAAAAAAATTTAACATGTATAAAAAATTTTCATAGGAATTAAATATAGTCTCC
CTGTGTCAGATTGCTCTTTCTTAGCATAACTTTAAATCTTTTCTTGAACTTCAGTCTTTG
AAAGTAGTTTTAATTCTACTGATAGTGATGTTAAAGATTATTTGGGCCAGTTAGCTTAGT
AGGTTACAAAGGCCAGGCTTTGTGTGAACCTTTGAGCGCCACTGAGAGCTTCACAGGTGG
ACTGCATTCCTGTGATCCTCCAGTGTTGTTATGCCTGGGCTGGTCAGGAATGGCGACTAG
GAGAGAGTTTGGTTAGCTCAGCAAGGTACATTGTCACCATGTGGTAGTCCTACTCAGGAA
CATCACTTTTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               116-1030, gnl|bosTau2|chr5 (51703863-51704792)
               

               
               116-1030, gnl|Hg17|chr12 (25253748-25252810)
               

               
               116-1030, gnl|Mm7|chr6 (145311220-145310360)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-1030, gnl|bosTau2|chr5 (51703863-51704792)
               

               
               116-1030, gnl|Hg17|chr12 (25253748-25252810)
               

               
               116-1030, gnl|Mm7|chr6 (145311220-145310360)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               clu (0.478583)
               

               
               liv (0.292569)
               

               
               spc (0.226732)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               liv (0.292569)
               

               
               spc (0.226732)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	116-1030, gnl\|bosTau2\|chr5 (51703863-51704792)
	116-1030, gnl\|Hg17\|chr12 (25253748-25252810)
	116-1030, gnl\|Mm7\|chr6 (145311220-145310360)

	clu (0.478583)
	liv (0.292569)
	spc (0.226732)
	tbr (0.154178)
	lin (0.145603)
	csk (0.140746)
	kid (0.129735)
	cbr (0.127975)
	thg (0.126791)
	tra (0.123092)