Non-Coding RNA Search

Ss1.1-rpliv0113_n2.5

Sequence:


               
               ATAAATTCCAATGAACCCGGAGTGATCATGTTTAAGACCGACGCGCTGAAATGCAGAGTA
GCTCTTAGTCCCAAAACCAACCAAACGCTTCAGCTCAAAGTGACACCCGAAAATGCAGGA
CAGTGGAAACCTGATGAACTGCAGGTTTTGGAGAAATTCTTTGAAACAAGAGTTGCAGGA
CCGCCGTTTAAAGCCAATACATTAATAGCTTTCACCAAGCTGTTAGGAGCTCCTACACAC
ATCCTCAGGGACTGTGTGCATATTATGAAGCTAGAGCTGTTTCCTGACCAGGCCACACAG
CTAAAATGGAACGTTCAGTTTTGCCTGACGATCCCTCCCAGCGCACCGCCAATTGCACCT
CCTGGGACACCCGCCGTGGTGCTGAAATCCAAAATGCTATTTTTCCTTCAGCTGACTCAG
AAAACATCCGTCCCTCCCCAAGAACCTGTTAGTATTATAGTTCCAATCATTTATGACATG
GCTTCAGGTACCACCCAGCAGGCAGACATTCCCAGACAGCAGAACTCTTCTGTTGCTGCT
CCCATGATGGTCAGCAACATTCTGAAGAGGTTTGCAGAGATGAACCCACCACGACAAGGT
GAATGCACAATATTTGCAGCTGTTCGTGATTTAATGGCTAATCTTACACTGCCCCCTGGT
GGGCGTCCATAGACACTATTGTTTTTAAACCAGGAAGGCTGACAAAAGAGACAAAACAAC
AAAAAAAAAAATCTGAATTCAGCCTTCAGTTTAAAAAAGAAAAAGGACTTTTTTTGACTT
TAAGAGCTAAATATCCTAAACTGGCAAAATTTTTCAGGGTGCACTTCTTTCATCAAAAAG
ACCATCAATCTTTTGTATAGTGAACTTGTATAGTGTGTTTAAATGGGACACATTTCAAAC
TAGGTAATACATCAGTGTCCGTTTGCCAGTAATAGATTTAATATTCTGTTTTATACTATA
AAGTTATGGTGATGCCAAATTTGTTTATTTAATTGTTTTCTTATGTTTGAGGTGTAATAG
TCCTTTTTTTGGTTTTTGTTTTATTTTTTTAAGGCAGGTCTGTCATTTTTGAATACTGTA
AAACTGTGATAAACTTTATATTGAAGCTGTATTTTAATATGACCGCATTGAATCCTTACC
TGGAAAATGTTCTGGGAGTTGTTATAAACACATCCCAAAGAAAGCAATATTTAATAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATTCCAATGAACCCGGAGTGATCATGTTTAAGACCGACGCGCTGAAATGCAGAGTA
GCTCTTAGTCCCAAAACCAACCAAACGCTTCAGCTCAAAGTGACACCCGAAAATGCAGGA
CAGTGGAAACCTGATGAACTGCAGGTTTTGGAGAAATTCTTTGAAACAAGAGTTGCAGGA
CCGCCGTTTAAAGCCAATACATTAATAGCTTTCACCAAGCTGTTAGGAGCTCCTACACAC
ATCCTCAGGGACTGTGTGCATATTATGAAGCTAGAGCTGTTTCCTGACCAGGCCACACAG
CTAAAATGGAACGTTCAGTTTTGCCTGACGATCCCTCCCAGCGCACCGCCAATTGCACCT
CCTGGGACACCCGCCGTGGTGCTGAAATCCAAAATGCTATTTTTCCTTCAGCTGACTCAG
AAAACATCCGTCCCTCCCCAAGAACCTGTTAGTATTATAGTTCCAATCATTTATGACATG
GCTTCAGGTACCACCCAGCAGGCAGACATTCCCAGACAGCAGAACTCTTCTGTTGCTGCT
CCCATGATGGTCAGCAACATTCTGAAGAGGTTTGCAGAGATGAACCCACCACGACAAGGT
GAATGCACAATATTTGCAGCTGTTCGTGATTTAATGGCTAATCTTACACTGCCCCCTGGT
GGGCGTCCATAGACACTATTGTTTTTAAACCAGGAAGGCTGACAAAAGAGACAAAACAAC
AAAAAAAAAAATCTGAATTCAGCCTTCAGTTTAAAAAAGAAAAAGGACTTTTTTTGACTT
TAAGAGCTAAATATCCTAAACTGGCAAAATTTTTCAGGGTGCACTTCTTTCATCAAAAAG
ACCATCAATCTTTTGTATAGTGAACTTGTATAGTGTGTTTAAATGGGACACATTTCAAAC
TAGGTAATACATCAGTGTCCGTTTGCCAGTAATAGATTTAATATTCTGTTTTATACTATA
AAGTTATGGTGATGCCAAATTTGTTTATTTAATTGTTTTCTTATGTTTGAGGTGTAATAG
TCCTTTTTTTGGTTTTTGTTTTATTTTTTTAAGGCAGGTCTGTCATTTTTGAATACTGTA
AAACTGTGATAAACTTTATATTGAAGCTGTATTTTAATATGACCGCATTGAATCCTTACC
TGGAAAATGTTCTGGGAGTTGTTATAAACACATCCCAAAGAAAGCAATATTTAATAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61841035|ref|XP_613009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841035|ref|XP_613009.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               960-1200, gnl|bosTau2|chr3 (1528807-1529025)
               

               
               960-1200, gnl|Hg17|chrX (40267032-40266797)
               

               
               960-1200, gnl|Mm7|chrX (11110439-11110204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               960-1200, gnl|bosTau2|chr3 (1528807-1529025)
               

               
               960-1200, gnl|Hg17|chrX (40267032-40266797)
               

               
               960-1200, gnl|Mm7|chrX (11110439-11110204)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               liv (0.292569)
               

               
               nms (0.213858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               nms (0.213858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	960-1200, gnl\|bosTau2\|chr3 (1528807-1529025)
	960-1200, gnl\|Hg17\|chrX (40267032-40266797)
	960-1200, gnl\|Mm7\|chrX (11110439-11110204)

	liv (0.292569)
	nms (0.213858)
	spl (0.143184)
	nca (0.136874)
	ste (0.135208)
	kid (0.129735)
	thg (0.126791)
	ldo (0.0970026)