Non-Coding RNA Search

Ss1.1-rpliv0114_f2.5

Sequence:


               
               TTTTTTTAAATTAAAAAGTCATCTTCTGAATGTTTATTGGTTCTGCTGGTACTATCTGTC
AGTGGTTTAGAGTTGGCATGTATGGAGTCTCAGCTCTAAAGCAAAGCACACTGGCATCCC
ATGTGAGTAAATTCTAAACTCCAGCACAGAAATGTGGGTTAAAATCAAGTCTTGCTAGGT
TAGTGTACAATAAGCTATACCTGCAGAAATTTTTGGCAGAAAGAATACAAAGCTGCTGGT
ATAGGATTTGTTTATTTTGGAGAAAAATGAGGGAAACAAACAGAAAAACCTCAATGCAGT
GCATAATTTTGTTCAACTACCTCTTAATGCAGAATTAGCTAGTTTGTTTCCTCACAGTAA
TGTTAAATAGTAACTGCCAAATTTGTTAATTCCCCATCTCTTGAAAAGGCTTTATGATTA
TTTTATAGTTTTGGTAACTTTAAACCACTCTTTTTTTTAACCATGCATTTGCTTAAAAAT
GTTTAGCTTTTAAGTGGAGAGCAAATTATGATCATATATTTTGATATTCATGATTAGAAC
AGTTTTTTTTTAATGCACTTTGGCTGAAATCATGGATGATTTGATCTGTAAGATTTAAAT
GTGCCATCAATTCCGTATTCTCAGACATGAGCTTGATGAATGGTATTTTGTAATTATATA
ATGTGCCACACATTATTGTCTTAATTGCCCTTTGCCTGAATTTTAATGATCAATGTTATT
GTTGCAGATGTGAATATTGTGCATAAACTTACTAAATTTATGTAAAACTGTGTAAAATAG
AATTGGAAATAGCTAAGTTCTGTGTGGAAGGAATGAATTTATTGTGACATGACGCAGTAT
GTATAGCACATTCTGTCCTTCCTGAACTGGACCACATAGTCATAGCTTCTGTAGATACTT
TTGCATGACTATTTTCTCATTTAGCTTTTGGACGCCTTGTTTGTATGGTGTTTACTACTT
GTGATCATGTAGTTGTGCCTTATTTGTGAGAGAGTTTAGCTCAGTCAACACTGTGGTTTC
TAAACTCAGTGAGTGGAAGGTTATTGATTATAAATGTAACTGATACATTGCATAACATTG
ACATCTGTATAAAGAACAATGGCAGGATCCTTATTGAATTGCTGCTTTTTTTTTTTTTTT
AGTATGTTAAAGATGACATTAAAATCACTTCTTTCTAGTAGATATATTCTGTGACTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTAAATTAAAAAGTCATCTTCTGAATGTTTATTGGTTCTGCTGGTACTATCTGTC
AGTGGTTTAGAGTTGGCATGTATGGAGTCTCAGCTCTAAAGCAAAGCACACTGGCATCCC
ATGTGAGTAAATTCTAAACTCCAGCACAGAAATGTGGGTTAAAATCAAGTCTTGCTAGGT
TAGTGTACAATAAGCTATACCTGCAGAAATTTTTGGCAGAAAGAATACAAAGCTGCTGGT
ATAGGATTTGTTTATTTTGGAGAAAAATGAGGGAAACAAACAGAAAAACCTCAATGCAGT
GCATAATTTTGTTCAACTACCTCTTAATGCAGAATTAGCTAGTTTGTTTCCTCACAGTAA
TGTTAAATAGTAACTGCCAAATTTGTTAATTCCCCATCTCTTGAAAAGGCTTTATGATTA
TTTTATAGTTTTGGTAACTTTAAACCACTCTTTTTTTTAACCATGCATTTGCTTAAAAAT
GTTTAGCTTTTAAGTGGAGAGCAAATTATGATCATATATTTTGATATTCATGATTAGAAC
AGTTTTTTTTTAATGCACTTTGGCTGAAATCATGGATGATTTGATCTGTAAGATTTAAAT
GTGCCATCAATTCCGTATTCTCAGACATGAGCTTGATGAATGGTATTTTGTAATTATATA
ATGTGCCACACATTATTGTCTTAATTGCCCTTTGCCTGAATTTTAATGATCAATGTTATT
GTTGCAGATGTGAATATTGTGCATAAACTTACTAAATTTATGTAAAACTGTGTAAAATAG
AATTGGAAATAGCTAAGTTCTGTGTGGAAGGAATGAATTTATTGTGACATGACGCAGTAT
GTATAGCACATTCTGTCCTTCCTGAACTGGACCACATAGTCATAGCTTCTGTAGATACTT
TTGCATGACTATTTTCTCATTTAGCTTTTGGACGCCTTGTTTGTATGGTGTTTACTACTT
GTGATCATGTAGTTGTGCCTTATTTGTGAGAGAGTTTAGCTCAGTCAACACTGTGGTTTC
TAAACTCAGTGAGTGGAAGGTTATTGATTATAAATGTAACTGATACATTGCATAACATTG
ACATCTGTATAAAGAACAATGGCAGGATCCTTATTGAATTGCTGCTTTTTTTTTTTTTTT
AGTATGTTAAAGATGACATTAAAATCACTTCTTTCTAGTAGATATATTCTGTGACTAAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               137-291, - strand, RNAz p=0.993188
               

               
               922-1039, + strand, RNAz p=0.721977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-291, - strand, RNAz p=0.993188
               

               
               922-1039, + strand, RNAz p=0.721977

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC041930, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC041930, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1200, gnl|bosTau2|chr16 (34476072-34477259)
               

               
               1-1200, gnl|Hg17|chr12 (91669985-91668731)
               

               
               1-1200, gnl|Mm7|chr10 (95606763-95608020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr16 (34476072-34477259)
               

               
               1-1200, gnl|Hg17|chr12 (91669985-91668731)
               

               
               1-1200, gnl|Mm7|chr10 (95606763-95608020)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbr (0.639877)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.639877)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	137-291, - strand, RNAz p=0.993188
	922-1039, + strand, RNAz p=0.721977

	1-1200, gnl\|bosTau2\|chr16 (34476072-34477259)
	1-1200, gnl\|Hg17\|chr12 (91669985-91668731)
	1-1200, gnl\|Mm7\|chr10 (95606763-95608020)

	cbr (0.639877)
	gul (0.355177)
	rec (0.346141)
	ski (0.29347)
	lyg (0.266205)
	mgm (0.180343)
	fty (0.17584)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	ese (0.126502)
	cty (0.10408)