Non-Coding RNA Search

Ss1.1-rpliv0114_h5.5

Sequence:


               
               TGATGGCAGACTGCTCTAATATTCCAGCGTCACTGTCTTGGTTCTGAGGTATTCATTTAG
AGCTTCCTCACCTAGGGAAGAGAAAAGCAAGTGATGGACCATGTTCACAGGTGGATATGA
GGTTGCCAGATCTTAAACATGGGTGTAGGCATATCAGTCACTAAGCAAACAGAACGGGGC
TGAACTTTAAATGTCAAGTGAATCAGAGTTCCCTGATGGCATAGTGGTTCAGGATCCAGA
ACTGTCACTGCCGTGGTGCAGGTTCGACCCCTGGCCCAGGAACTTCGCATGCTGTAGGGG
TGGCCCCCCCAAAAATGTCATGTGAATCACCTGAAGATCTTGTGACACTGTGGATTCTGT
CCCGCTGAGGCCCCAAGGTTAACCGTTTCTAACCATTTCCAGAATACCAATGCCTGTGGT
TCACACATTGAGGAGTAAGGGCCTAGACCAGCTACCAGGACTTCTAAGGACCAGCACGCT
GGCTTATCAGTCTCTACTCCAAACCCTTCTCCTTTACTTCCTGGCTGGATGATAAATCTC
CGTCTCTGTCCCATGCCCTTTTAGGCTGAACAGGAGTGACCAGGATATTGTCCTTCAGAT
TACATGAAATGAAGCAGAACAGAGCAGAAGAAAGAACGCTCGAGATCATTTCAATTTAAA
GATAAGGAAAATGGGAGGTCCCATCATGGCTCAGCAGAAACGAATTTGACTGGCATGCGT
GAGGACACAGGTTCAGTCCCTGGCCTTGCTCAGTGAGTTAAGGATCTGGTGTTGCTGTGG
TTGGTGTAGGTTGCAGATGCAGCTCGGATCCTGTGTGGCTGTGGCTGTGGCTGTGGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGGCAGACTGCTCTAATATTCCAGCGTCACTGTCTTGGTTCTGAGGTATTCATTTAG
AGCTTCCTCACCTAGGGAAGAGAAAAGCAAGTGATGGACCATGTTCACAGGTGGATATGA
GGTTGCCAGATCTTAAACATGGGTGTAGGCATATCAGTCACTAAGCAAACAGAACGGGGC
TGAACTTTAAATGTCAAGTGAATCAGAGTTCCCTGATGGCATAGTGGTTCAGGATCCAGA
ACTGTCACTGCCGTGGTGCAGGTTCGACCCCTGGCCCAGGAACTTCGCATGCTGTAGGGG
TGGCCCCCCCAAAAATGTCATGTGAATCACCTGAAGATCTTGTGACACTGTGGATTCTGT
CCCGCTGAGGCCCCAAGGTTAACCGTTTCTAACCATTTCCAGAATACCAATGCCTGTGGT
TCACACATTGAGGAGTAAGGGCCTAGACCAGCTACCAGGACTTCTAAGGACCAGCACGCT
GGCTTATCAGTCTCTACTCCAAACCCTTCTCCTTTACTTCCTGGCTGGATGATAAATCTC
CGTCTCTGTCCCATGCCCTTTTAGGCTGAACAGGAGTGACCAGGATATTGTCCTTCAGAT
TACATGAAATGAAGCAGAACAGAGCAGAAGAAAGAACGCTCGAGATCATTTCAATTTAAA
GATAAGGAAAATGGGAGGTCCCATCATGGCTCAGCAGAAACGAATTTGACTGGCATGCGT
GAGGACACAGGTTCAGTCCCTGGCCTTGCTCAGTGAGTTAAGGATCTGGTGTTGCTGTGG
TTGGTGTAGGTTGCAGATGCAGCTCGGATCCTGTGTGGCTGTGGCTGTGGCTGTGGCTGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-129, gnl|bosTau2|chr5 (64705613-64705488)
               

               
               2-129, gnl|Hg17|chr12 (103920657-103920784)
               


               
               353-611, gnl|bosTau2|chr5 (64705179-64704920)
               

               
               353-611, gnl|Hg17|chr12 (103920947-103921176)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-129, gnl|bosTau2|chr5 (64705613-64705488)
               

               
               2-129, gnl|Hg17|chr12 (103920657-103920784)
               


               
               353-611, gnl|bosTau2|chr5 (64705179-64704920)
               

               
               353-611, gnl|Hg17|chr12 (103920947-103921176)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

	2-129, gnl\|bosTau2\|chr5 (64705613-64705488)
	2-129, gnl\|Hg17\|chr12 (103920657-103920784)

	353-611, gnl\|bosTau2\|chr5 (64705179-64704920)
	353-611, gnl\|Hg17\|chr12 (103920947-103921176)