Non-Coding RNA Search

Ss1.1-rpliv0114_i22.5

Sequence:


               
               CTGTCAGTGATTATTGTAGTCTTGGGAATTATTTTGTGGATAATTCTAGGTAATAAATGA
AGTGATTGCCTCCAAGCCTTCTTCCGCTGACTGTTTTCAAGGGCAAGTGCTTGTTGGAAT
CTTGCCAGAACAAACTGATCACAAGAAGAGAGAATACACCAGAACGTCCTGTAATAATTT
AGTTAGAAACTAACTACTAACTAGTCCTTGGAATTAGTGACCTATGGAGACAGTATTTAT
CAACTTATGTATGCATTCTATTCATTTCTCAAATTAAGAATTAATTTATGTGGATTTTGT
TTTCTCTTGTATTCTGATTGCCCTTCATCCCAAGTGTTTATCGAAAATTCCATTCTAGAT
ATTCTTGTTTTGGCAGGTGACACTACAGTCTTGTAATATTGTCTTTTTATGTGTATAGAA
GATTTACATTTTGACTAGCAACTGAGATAGAATTACTTTCTGGCACCAAACCTACTAGAG
TTCATCAGAAACTGTATAATAAGCCAGCAATTTTTATAATTTAACATTTTAATTTGAATT
ACTAAGAAGCCTGTTCCCTATTTGCTTTGAAAGATTTTGGCAATGCATTTAACTAGAAAA
CGAACAATTGCACATGTGATCCAGATTACATGAGAAAGTAACTATTTGAGCTGGCCAGTT
GTTGGGAAACATGTTAATCTGGGTTTTAAGTTTCTTATCTGCTAGTGTCATCTATTGCAG
TTCATCCATATATACACTAAACCATCTTGTTCACTTTTTGAAGAGGTTAATTTAATTAAC
GTTACTATACTCTGTGGGATCCCTCTCCCACCTGTCTGTATAGAAGGGGAGTATTTGACA
AAGCATGCTTTGGAAAGCAAATAGGAATTGTTTGGAATGATTTAGTCTTTTTGTTTCATT
GCTAAGTTGTGGTTATACATTCCTGGTGAATGATGAAGGTTGCCATCAAAAGGCTGCCCA
TACCCTCATAATGGTTGCTGGGCATTTGATGGCAGGAAGATTTTAAAAGCTAGACTGAAG
TTGGTTTAAAATTTAGTCCTGTGAATCTGGCGATAAAGCAAAGAAAAGGTTCTTTTTTGT
AAATAATATTGGTTTAGAATAGTGATGTTAGACTTATCCTAATTTATGACTAAGAGATTA
ATCTCTCCCTGCATAGTTTTAGACAAAAAAACGTTTCAATAAAATATTGCTGTCTTGTAA
TATAGATGTTGTCCTCTCCCATTTTTCTCAGGTCTAGGTACATTAAAGGGAATGTAATTT
CTTTAGGCTCTCAAAAAAATGTGAATCGGGTTAACAATTTCAGTTCCTCCATTAGTGAAT
TAGAGGATTTGCTACCCTGGATATATTTGTATTTATTTCTTCCACTTCCAGTAATGTTAC
TTAATATTTACTAATGTGAACAGCAGGGAAACAAGGGCTAAATACGTAAGTTTCTTTGAA
CTCCTGCACCATCCCACCACAAATACAAATAAACATTTCAAAAGCTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCAGTGATTATTGTAGTCTTGGGAATTATTTTGTGGATAATTCTAGGTAATAAATGA
AGTGATTGCCTCCAAGCCTTCTTCCGCTGACTGTTTTCAAGGGCAAGTGCTTGTTGGAAT
CTTGCCAGAACAAACTGATCACAAGAAGAGAGAATACACCAGAACGTCCTGTAATAATTT
AGTTAGAAACTAACTACTAACTAGTCCTTGGAATTAGTGACCTATGGAGACAGTATTTAT
CAACTTATGTATGCATTCTATTCATTTCTCAAATTAAGAATTAATTTATGTGGATTTTGT
TTTCTCTTGTATTCTGATTGCCCTTCATCCCAAGTGTTTATCGAAAATTCCATTCTAGAT
ATTCTTGTTTTGGCAGGTGACACTACAGTCTTGTAATATTGTCTTTTTATGTGTATAGAA
GATTTACATTTTGACTAGCAACTGAGATAGAATTACTTTCTGGCACCAAACCTACTAGAG
TTCATCAGAAACTGTATAATAAGCCAGCAATTTTTATAATTTAACATTTTAATTTGAATT
ACTAAGAAGCCTGTTCCCTATTTGCTTTGAAAGATTTTGGCAATGCATTTAACTAGAAAA
CGAACAATTGCACATGTGATCCAGATTACATGAGAAAGTAACTATTTGAGCTGGCCAGTT
GTTGGGAAACATGTTAATCTGGGTTTTAAGTTTCTTATCTGCTAGTGTCATCTATTGCAG
TTCATCCATATATACACTAAACCATCTTGTTCACTTTTTGAAGAGGTTAATTTAATTAAC
GTTACTATACTCTGTGGGATCCCTCTCCCACCTGTCTGTATAGAAGGGGAGTATTTGACA
AAGCATGCTTTGGAAAGCAAATAGGAATTGTTTGGAATGATTTAGTCTTTTTGTTTCATT
GCTAAGTTGTGGTTATACATTCCTGGTGAATGATGAAGGTTGCCATCAAAAGGCTGCCCA
TACCCTCATAATGGTTGCTGGGCATTTGATGGCAGGAAGATTTTAAAAGCTAGACTGAAG
TTGGTTTAAAATTTAGTCCTGTGAATCTGGCGATAAAGCAAAGAAAAGGTTCTTTTTTGT
AAATAATATTGGTTTAGAATAGTGATGTTAGACTTATCCTAATTTATGACTAAGAGATTA
ATCTCTCCCTGCATAGTTTTAGACAAAAAAACGTTTCAATAAAATATTGCTGTCTTGTAA
TATAGATGTTGTCCTCTCCCATTTTTCTCAGGTCTAGGTACATTAAAGGGAATGTAATTT
CTTTAGGCTCTCAAAAAAATGTGAATCGGGTTAACAATTTCAGTTCCTCCATTAGTGAAT
TAGAGGATTTGCTACCCTGGATATATTTGTATTTATTTCTTCCACTTCCAGTAATGTTAC
TTAATATTTACTAATGTGAACAGCAGGGAAACAAGGGCTAAATACGTAAGTTTCTTTGAA
CTCCTGCACCATCCCACCACAAATACAAATAAACATTTCAAAAGCTAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               894-1047, - strand, RNAz p=0.978802
               

               
               1245-1465, + strand, RNAz p=0.896059

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               894-1047, - strand, RNAz p=0.978802
               

               
               1245-1465, + strand, RNAz p=0.896059

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               966-1026, + strand, RNAmicro p=0.926096

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               966-1026, + strand, RNAmicro p=0.926096

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC046999, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC046999, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1486, gnl|bosTau2|chr2 (75995892-75997380)
               

               
               1-1486, gnl|Hg17|chr1 (27832923-27834421)
               

               
               1-1486, gnl|Mm7|chr4 (132233952-132232497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1486, gnl|bosTau2|chr2 (75995892-75997380)
               

               
               1-1486, gnl|Hg17|chr1 (27832923-27834421)
               

               
               1-1486, gnl|Mm7|chr4 (132233952-132232497)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               nco (0.485201)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               jej (0.296765)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               jej (0.296765)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	894-1047, - strand, RNAz p=0.978802
	1245-1465, + strand, RNAz p=0.896059

	1-1486, gnl\|bosTau2\|chr2 (75995892-75997380)
	1-1486, gnl\|Hg17\|chr1 (27832923-27834421)
	1-1486, gnl\|Mm7\|chr4 (132233952-132232497)

	nco (0.485201)
	fcc (0.39557)
	aor (0.390549)
	jej (0.296765)
	liv (0.292569)
	hyp (0.285673)
	pla (0.267344)
	kid (0.259471)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	ldo (0.194005)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	ute (0.132784)
	bla (0.124347)
	jca (0.11396)