Non-Coding RNA Search

Ss1.1-rpliv0115_a4.5

Sequence:


               
               AATCCTCACCCAATATTCATTGAACATCCAAAATGACTGGTTGCGTATAAAAGTAAAGGA
AAAAGATGAAAAATGTGGATGAAACACTGTGATCATGTTATCAAAGAATATCTCTAATGA
TGGGCGGAAATTTTTCATTCTCTAGAAATAGAACCACCCATTATAATGTAAATTTATTCA
ACTTTTATATACATTTTAAGGAATACATTATGTAACAAAACCACAGATTTCAATACAATG
AGAATCAGAAACTAAATTGTGGCTAGGCGTCCAAAGAGACTGTTAAAAAGTTCTTTATAT
GATGCCTCAGGAGACAGCTCTGCCTCCATCAACCTTCCCTGAGGTTTTACAAACTGGCTC
AATAGACAATGAAGTTATTGGTCATATTAATTGCCATTGTCTTTGCCTCTAACTCTACAA
GCTCCACTGTCTTCCAGCTCCTAGGCCAGCACTCTTCCTTCATCTTATATTAACACCTAT
GAGCAGATAACTCAACTATATGAGCAAGAAAGTACAAATGCTGAGAGACTATAAGCAGGT
TTGTGTTGCAATCAAATAATTTAACTTGACATATTTAATGATGTGACTAATCCCTAATGC
TTTGCCATAATTAGGCAAAGTAATAGTATGTAAATGACTTCAATGAATATTTTTACAAGT
CAAGCTAAGTTACCCTCTCCCCCCCACCTTTGTCTTGCTTTGTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCTCACCCAATATTCATTGAACATCCAAAATGACTGGTTGCGTATAAAAGTAAAGGA
AAAAGATGAAAAATGTGGATGAAACACTGTGATCATGTTATCAAAGAATATCTCTAATGA
TGGGCGGAAATTTTTCATTCTCTAGAAATAGAACCACCCATTATAATGTAAATTTATTCA
ACTTTTATATACATTTTAAGGAATACATTATGTAACAAAACCACAGATTTCAATACAATG
AGAATCAGAAACTAAATTGTGGCTAGGCGTCCAAAGAGACTGTTAAAAAGTTCTTTATAT
GATGCCTCAGGAGACAGCTCTGCCTCCATCAACCTTCCCTGAGGTTTTACAAACTGGCTC
AATAGACAATGAAGTTATTGGTCATATTAATTGCCATTGTCTTTGCCTCTAACTCTACAA
GCTCCACTGTCTTCCAGCTCCTAGGCCAGCACTCTTCCTTCATCTTATATTAACACCTAT
GAGCAGATAACTCAACTATATGAGCAAGAAAGTACAAATGCTGAGAGACTATAAGCAGGT
TTGTGTTGCAATCAAATAATTTAACTTGACATATTTAATGATGTGACTAATCCCTAATGC
TTTGCCATAATTAGGCAAAGTAATAGTATGTAAATGACTTCAATGAATATTTTTACAAGT
CAAGCTAAGTTACCCTCTCCCCCCCACCTTTGTCTTGCTTTGTTATTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-308, gnl|bosTau2|chr26 (8054426-8054119)
               

               
               1-308, gnl|Hg17|chr10 (98342979-98342635)
               


               
               333-684, gnl|bosTau2|chr26 (8054117-8053762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr26 (8054426-8054119)
               

               
               1-308, gnl|Hg17|chr10 (98342979-98342635)
               


               
               333-684, gnl|bosTau2|chr26 (8054117-8053762)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               liv (0.292569)
               

               
               hea (0.204499)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-308, gnl\|bosTau2\|chr26 (8054426-8054119)
	1-308, gnl\|Hg17\|chr10 (98342979-98342635)

	333-684, gnl\|bosTau2\|chr26 (8054117-8053762)

	liv (0.292569)
	hea (0.204499)
	lun (0.150489)
	spl (0.143184)
	pgl (0.118483)
	med (0.116252)
	cbl (0.114797)
	cty (0.10408)