Non-Coding RNA Search

Ss1.1-rpliv0115_e18.5

Sequence:


               
               AGGCTTGTGCAGCCCTCAAAAACACAAAAACAACAAAAAAGAAATTTCAGGCATGAATTA
ATGAATGAAAGGTTGTTAAGGGGTTTTTTTTTGGTTATTGTTGGTTGATTGACTTTTGTT
TGTTTGTCTTCCCGGGCAATTGCTTTCATGATATTCCTGAACTTGTGTTTTGTAAATGAT
TGCCATGTTCTGCCTATGAGTGAGATCTATATTTCACTATTACTGTTTACTAGTCATCCA
TTAATATGATGCCTGGTTTAAACTTTCGAACAACTAAATTTTGAAGCAATCATGGAGATG
AGCCCAAAATTTAAAGGAAAGTCATGTTTTAGTAAGACCCTTTTTCATTCAAATTTTGGG
AATTTAAAGATCCAAAGATCTGAAGATCTTTAAATCTGGGCTTTTTTTTGCCAAACCTTG
TACCTTGTCTCATTGGACTAGATGCCTCCTGCTTGGATGGTGCTTTCAACTCTGGGTTAC
TGACAAAGACCAAGGAGGGATCAAAAGAGACCAAAAAGAATCGCAGGGATTTCTAAGCTC
TAGGCTTGAGGAAATAGATGTATTTCTTTTCACTTCCATCCACATTGTTGATTTGAGCTC
ACCAGCATAGCAGAAGAGACAGAGGTTCCAGACAGAAATTCTGTCCAGAAGTAAAGATCT
TAGTGACCTATTCCCATGCTACCATTCAGAGCTGAGTGTAGCAGACATGGAAGTGCAAGA
AGGTAAGGGACTCCCAGCAGATCTCAATGATACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTTGTGCAGCCCTCAAAAACACAAAAACAACAAAAAAGAAATTTCAGGCATGAATTA
ATGAATGAAAGGTTGTTAAGGGGTTTTTTTTTGGTTATTGTTGGTTGATTGACTTTTGTT
TGTTTGTCTTCCCGGGCAATTGCTTTCATGATATTCCTGAACTTGTGTTTTGTAAATGAT
TGCCATGTTCTGCCTATGAGTGAGATCTATATTTCACTATTACTGTTTACTAGTCATCCA
TTAATATGATGCCTGGTTTAAACTTTCGAACAACTAAATTTTGAAGCAATCATGGAGATG
AGCCCAAAATTTAAAGGAAAGTCATGTTTTAGTAAGACCCTTTTTCATTCAAATTTTGGG
AATTTAAAGATCCAAAGATCTGAAGATCTTTAAATCTGGGCTTTTTTTTGCCAAACCTTG
TACCTTGTCTCATTGGACTAGATGCCTCCTGCTTGGATGGTGCTTTCAACTCTGGGTTAC
TGACAAAGACCAAGGAGGGATCAAAAGAGACCAAAAAGAATCGCAGGGATTTCTAAGCTC
TAGGCTTGAGGAAATAGATGTATTTCTTTTCACTTCCATCCACATTGTTGATTTGAGCTC
ACCAGCATAGCAGAAGAGACAGAGGTTCCAGACAGAAATTCTGTCCAGAAGTAAAGATCT
TAGTGACCTATTCCCATGCTACCATTCAGAGCTGAGTGTAGCAGACATGGAAGTGCAAGA
AGGTAAGGGACTCCCAGCAGATCTCAATGATACAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               277-471, - strand, RNAz p=0.999678

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-471, - strand, RNAz p=0.999678

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               38-749, gnl|bosTau2|chr1 (61682710-61682008)
               

               
               38-749, gnl|Hg17|chr3 (173708322-173707608)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-749, gnl|bosTau2|chr1 (61682710-61682008)
               

               
               38-749, gnl|Hg17|chr3 (173708322-173707608)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               liv (0.146284)

	38-749, gnl\|bosTau2\|chr1 (61682710-61682008)
	38-749, gnl\|Hg17\|chr3 (173708322-173707608)