Ss1.1-rpliv0115_o15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTCTAGGCGGCCGGTACTGTGGAAAGCGGCAAGTGGAGGCGCCGCTCCAGCGGCCAGG ACTGTGGACTATGGCGGCTAGTGATACAGAACGAGATGGACTAGCCCCAGAAAAGACATC CCCAGATAGAGAGAAGAAAAAAGAGCAGTCGGATGTATCTGTTTCTCCTAGAGCCTCAAA ACATCATTATTCAAGATCACGATCAAGGTCAAGAGAAAGAAAGCGAAAGTCAGATAATGA AGGAAGAAAACACAGGAGCCGGAGCAGAAGCAAAGAGGCAAGAAGACATGAATCCAAAGA TAAATCCTCTAAGAAACATAAGTCTGAGGAACATAATGACAAAGAACATTCTTCTGATAA AGGAAGAGAGCGGCTAAATTCATCTGAAAATGGTGAGGACAGACACAAACGAAAGGAAAG AAAGTCATCGAGAGGCAGAAGTCATTCAAGGTCTAGGTCTCGTGAAAGGCGTCATCGTAG TAGAAGCAGAGAGCGGAAGAAGTCAAGGTCCAGGAGTAGGGAGCGGAAGAAATCAAGATC CAGAAGCAGAGAGAGGAAGAAATCACGATCCAGAAGCAGGGAGAGAAAACGTCGTATCCG ATCTCGTTCCCGCTCAAGGTCGAGACACAGGCATAGAAGTAGAAGCAGGAGTAGGACGAG GAGTAGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAAGATTTAGCAGAAGTTT GAGCCGAACTCCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCAATGGATGCACAAGA AGCTTTAGCTAGGAGATTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT GGTTGAAAAACAAAAACAACAAGAAATGGCTGCAGCAGCTGCAGCTACGGGAGGTTCTGT TCTCAATGTTGCTGCCCTGTTGGCTTCAGGAACACAAGTAACTCCTCAAATAGCTATGGC AGCTCAAATGGCAGCCTTGCAGGCTAAAGCCTTGGCAGAGACCGGAATAGCTGTACCTAG CTATTACAACCCAGCAGCTGTGAATCCGATGAAATTTGCTGAACAAGAGAAGAAAAGGAA AATGCTTTGGCAAGGCAAGAAAGAAGGGGACAAATCCCAGTCTGCTGAAATATGGGAGAA ATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTAATGGGTATTAAGAG TGAAGATGAAGCTGGATGTAGCTCTGTTGATGAAGAAAGTTACAAGACATTGAAACAGCA GGAAGAAGTATTTAGAAATCTGGATGCTCAGTATGAAATGGCAAGATCACAAACTCACAC ACAAAGAGGAATGGGATTGGGTTTCACATCATCAATGCGAGGAATGGATGCAGTTTGAAG AAAATCACACTTAATATTGGGACTTTATAGACTTCTGGTTCTGATGTCAGGTCCTTGTTC ACCAAACAGCTAGCATTCTAGCTTGCATGGGTGTTGCATTGACTTTAATTTATTGAAAAA TACAATTTTTTGTAAATATCAGATCAGTGATACTGGTGTTAGTGTTGTAATCAGGTTAAA CCCACTTCCATTAAACTTGACAGGATTATAGAAGGACAATATTTTTTAGTTCATGAATTC TACTTTTCAAATATATGAACGCTGCAGGTTGGGATAAAAATCTCATACATGGATTTTTGG TGTCCACTGTCTTGTGTACTTTTGTACTTAACCTTGTACAGTTATTTTCATCTCTTGAAA CATGAAAGAAATGTTAATGTAGATGTTCTTTAGAAGATCTGGCCATTTGGTACATAATCC AGCACAAATAAGCTGGGTGGTGATGATAATAAAAATGGTTTTCTCAAAACTGGTGTTAAT TTAAGTTACCTGGAATTCTTATTTGAATTTGTTTTATGATTTTTGTAGCATTTTGCAATT GCTATTAGAAGACACTGGCTTAGAAGTTCCTTTTTTTTTTTTTTTTTAAGAACAATTAAC TATGATACAGGCAATACCATGGTGAACAAAAATGTAAAAGGAAGTCGGGAGAAGTGAACA AACTTACTGAGTAATACTGTTTTCCTACTATAAGGGACAGAATTGGTGTACAGTATTTGT TAAATATTCCATGTTATTCAGGAAATAGATTAATACATTAAAGGGATGTAAGCACTTTTA TTTTAATAAAGTGCCTTATAACAAGTTCTCTGTATGCCCTTTGCTCATTATCCCTTTTGA ATTTTTCTCTACTATAAAGTACTAAAACAGTAGAAAATCACTTTGTCACTACGTTGAATA AATTTAGGGCATAAATTTGGAGGAGAGAGTACTACAAAATTTGAACTTAATTGGCTTTCA TTACAACAAAGTCATAATTTCTAGCTTTCTGTAGGGAAAAAATCCTTTGAAAATAATCTC CACAATATAGTAGCACAATGCAGCAGCAGAAGTCTGCTCAATATGTTTAGTTTTCCTAGA GCACAATGATTCTCTGGAGAGATGGCTCTTCATGCTTCAGTGACAAAGTCATGTTTCTGG AGAAAAGATACCATGGTTTTCCATTTTGAAATCATCCCAAATTGAATTTTATGTTGAGCT AAAGGTTGAATTGGCTTCATTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTCTAGGCGGCCGGTACTGTGGAAAGCGGCAAGTGGAGGCGCCGCTCCAGCGGCCAGG ACTGTGGACTATGGCGGCTAGTGATACAGAACGAGATGGACTAGCCCCAGAAAAGACATC CCCAGATAGAGAGAAGAAAAAAGAGCAGTCGGATGTATCTGTTTCTCCTAGAGCCTCAAA ACATCATTATTCAAGATCACGATCAAGGTCAAGAGAAAGAAAGCGAAAGTCAGATAATGA AGGAAGAAAACACAGGAGCCGGAGCAGAAGCAAAGAGGCAAGAAGACATGAATCCAAAGA TAAATCCTCTAAGAAACATAAGTCTGAGGAACATAATGACAAAGAACATTCTTCTGATAA AGGAAGAGAGCGGCTAAATTCATCTGAAAATGGTGAGGACAGACACAAACGAAAGGAAAG AAAGTCATCGAGAGGCAGAAGTCATTCAAGGTCTAGGTCTCGTGAAAGGCGTCATCGTAG TAGAAGCAGAGAGCGGAAGAAGTCAAGGTCCAGGAGTAGGGAGCGGAAGAAATCAAGATC CAGAAGCAGAGAGAGGAAGAAATCACGATCCAGAAGCAGGGAGAGAAAACGTCGTATCCG ATCTCGTTCCCGCTCAAGGTCGAGACACAGGCATAGAAGTAGAAGCAGGAGTAGGACGAG GAGTAGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAAGATTTAGCAGAAGTTT GAGCCGAACTCCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCAATGGATGCACAAGA AGCTTTAGCTAGGAGATTGGAAAGGGCAAAGAAATTACAAGAACAGCGAGAAAAGGAAAT GGTTGAAAAACAAAAACAACAAGAAATGGCTGCAGCAGCTGCAGCTACGGGAGGTTCTGT TCTCAATGTTGCTGCCCTGTTGGCTTCAGGAACACAAGTAACTCCTCAAATAGCTATGGC AGCTCAAATGGCAGCCTTGCAGGCTAAAGCCTTGGCAGAGACCGGAATAGCTGTACCTAG CTATTACAACCCAGCAGCTGTGAATCCGATGAAATTTGCTGAACAAGAGAAGAAAAGGAA AATGCTTTGGCAAGGCAAGAAAGAAGGGGACAAATCCCAGTCTGCTGAAATATGGGAGAA ATTGAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGGAAATTAATGGGTATTAAGAG TGAAGATGAAGCTGGATGTAGCTCTGTTGATGAAGAAAGTTACAAGACATTGAAACAGCA GGAAGAAGTATTTAGAAATCTGGATGCTCAGTATGAAATGGCAAGATCACAAACTCACAC ACAAAGAGGAATGGGATTGGGTTTCACATCATCAATGCGAGGAATGGATGCAGTTTGAAG AAAATCACACTTAATATTGGGACTTTATAGACTTCTGGTTCTGATGTCAGGTCCTTGTTC ACCAAACAGCTAGCATTCTAGCTTGCATGGGTGTTGCATTGACTTTAATTTATTGAAAAA TACAATTTTTTGTAAATATCAGATCAGTGATACTGGTGTTAGTGTTGTAATCAGGTTAAA CCCACTTCCATTAAACTTGACAGGATTATAGAAGGACAATATTTTTTAGTTCATGAATTC TACTTTTCAAATATATGAACGCTGCAGGTTGGGATAAAAATCTCATACATGGATTTTTGG TGTCCACTGTCTTGTGTACTTTTGTACTTAACCTTGTACAGTTATTTTCATCTCTTGAAA CATGAAAGAAATGTTAATGTAGATGTTCTTTAGAAGATCTGGCCATTTGGTACATAATCC AGCACAAATAAGCTGGGTGGTGATGATAATAAAAATGGTTTTCTCAAAACTGGTGTTAAT TTAAGTTACCTGGAATTCTTATTTGAATTTGTTTTATGATTTTTGTAGCATTTTGCAATT GCTATTAGAAGACACTGGCTTAGAAGTTCCTTTTTTTTTTTTTTTTTAAGAACAATTAAC TATGATACAGGCAATACCATGGTGAACAAAAATGTAAAAGGAAGTCGGGAGAAGTGAACA AACTTACTGAGTAATACTGTTTTCCTACTATAAGGGACAGAATTGGTGTACAGTATTTGT TAAATATTCCATGTTATTCAGGAAATAGATTAATACATTAAAGGGATGTAAGCACTTTTA TTTTAATAAAGTGCCTTATAACAAGTTCTCTGTATGCCCTTTGCTCATTATCCCTTTTGA ATTTTTCTCTACTATAAAGTACTAAAACAGTAGAAAATCACTTTGTCACTACGTTGAATA AATTTAGGGCATAAATTTGGAGGAGAGAGTACTACAAAATTTGAACTTAATTGGCTTTCA TTACAACAAAGTCATAATTTCTAGCTTTCTGTAGGGAAAAAATCCTTTGAAAATAATCTC CACAATATAGTAGCACAATGCAGCAGCAGAAGTCTGCTCAATATGTTTAGTTTTCCTAGA GCACAATGATTCTCTGGAGAGATGGCTCTTCATGCTTCAGTGACAAAGTCATGTTTCTGG AGAAAAGATACCATGGTTTTCCATTTTGAAATCATCCCAAATTGAATTTTATGTTGAGCT AAAGGTTGAATTGGCTTCATTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 506-2259, - strand, RNAz p=0.899601 | |
| 1673-1829, - strand, RNAz p=0.893406 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 506-2259, - strand, RNAz p=0.899601 | |
| 1673-1829, - strand, RNAz p=0.893406 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 62-237, gnl|bosTau2|chr17 (27876313-27876487) | |
| 62-237, gnl|canFam2|chr3 (55707654-55707789) | |
| 62-237, gnl|dasNov1|scaffold_56200 (715-852) | |
| 62-237, gnl|echTel1|scaffold_309476 (60230-60094) | |
| 62-237, gnl|galGal2|chr15 (5857736-5857599) | |
| 62-237, gnl|Hg17|chr12 (121531740-121531566) | |
| 62-237, gnl|hg17|chr15 (88219534-88219664) | |
| 62-237, gnl|loxAfr1|scaffold_674 (97583-97448) | |
| 62-237, gnl|mm7|chr4 (58525483-58525353) | |
| 62-237, gnl|Mm7|chr5 (122990969-122990795) | |
| 62-237, gnl|monDom2|scaffold_15 (51091246-51091106) | |
| 62-237, gnl|oryCun1|scaffold_69427 (6388-6511) | |
| 62-237, gnl|panTro1|chr16 (89145379-89145509) | |
| 62-237, gnl|rheMac2|chr7 (69508916-69509051) | |
| 62-237, gnl|rn3|chr2 (119820683-119820813) | |
| 467-672, gnl|bosTau2|chr17 (27880666-27880871) | |
| 467-672, gnl|canFam2|chr26 (9894215-9894064) | |
| 467-672, gnl|danRer3|chr17 (38934363-38934458) | |
| 467-672, gnl|dasNov1|scaffold_2337 (123180-123035) | |
| 467-672, gnl|fr1|chrUn (72443768-72443913) | |
| 467-672, gnl|galGal2|chr15 (5852962-5853096) | |
| 467-672, gnl|hg17|chr12 (121526631-121526782) | |
| 467-672, gnl|Hg17|chr12 (121526859-121526654) | |
| 467-672, gnl|loxAfr1|scaffold_674 (92637-92788) | |
| 467-672, gnl|mm7|chr5 (122985313-122985464) | |
| 467-672, gnl|Mm7|chr5 (122985541-122985336) | |
| 467-672, gnl|monDom2|scaffold_97 (2819090-2819215) | |
| 467-672, gnl|oryCun1|scaffold_204678 (25218-25067) | |
| 467-672, gnl|panTro1|chr10 (124598866-124599017) | |
| 467-672, gnl|rheMac2|chr11 (123759090-123759241) | |
| 467-672, gnl|rn3|chr12 (33850917-33850766) | |
| 467-672, gnl|xenTro1|scaffold_100 (1536210-1536282) | |
| 873-1107, gnl|bosTau2|chr17 (27885816-27886050) | |
| 873-1107, gnl|canFam2|chr26 (9902136-9901901) | |
| 873-1107, gnl|danRer3|chr17 (38931917-38932152) | |
| 873-1107, gnl|dasNov1|scaffold_2337 (130360-130125) | |
| 873-1107, gnl|echTel1|scaffold_309476 (49988-50223) | |
| 873-1107, gnl|fr1|chrUn (72442980-72443215) | |
| 873-1107, gnl|galGal2|chr15 (5848875-5849110) | |
| 873-1107, gnl|hg17|chr12 (121517643-121517878) | |
| 873-1107, gnl|Hg17|chr12 (121517881-121517646) | |
| 873-1107, gnl|loxAfr1|scaffold_674 (84945-85180) | |
| 873-1107, gnl|mm7|chr5 (122976879-122977114) | |
| 873-1107, gnl|Mm7|chr5 (122977114-122976882) | |
| 873-1107, gnl|monDom2|scaffold_97 (2812862-2813097) | |
| 873-1107, gnl|oryCun1|scaffold_204678 (31233-30998) | |
| 873-1107, gnl|panTro1|chr10 (124589917-124590156) | |
| 873-1107, gnl|rheMac2|chr11 (123750356-123750591) | |
| 873-1107, gnl|rn3|chr12 (33858046-33857811) | |
| 873-1107, gnl|tetNig1|chr12 (7007652-7007417) | |
| 873-1107, gnl|xenTro1|scaffold_100 (1532251-1532486) | |
| 1197-2580, gnl|bosTau2|chr17 (27887522-27888893) | |
| 1197-2580, gnl|Hg17|chr12 (121515135-121513058) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-237, gnl|bosTau2|chr17 (27876313-27876487) | |
| 62-237, gnl|canFam2|chr3 (55707654-55707789) | |
| 62-237, gnl|dasNov1|scaffold_56200 (715-852) | |
| 62-237, gnl|echTel1|scaffold_309476 (60230-60094) | |
| 62-237, gnl|galGal2|chr15 (5857736-5857599) | |
| 62-237, gnl|Hg17|chr12 (121531740-121531566) | |
| 62-237, gnl|hg17|chr15 (88219534-88219664) | |
| 62-237, gnl|loxAfr1|scaffold_674 (97583-97448) | |
| 62-237, gnl|mm7|chr4 (58525483-58525353) | |
| 62-237, gnl|Mm7|chr5 (122990969-122990795) | |
| 62-237, gnl|monDom2|scaffold_15 (51091246-51091106) | |
| 62-237, gnl|oryCun1|scaffold_69427 (6388-6511) | |
| 62-237, gnl|panTro1|chr16 (89145379-89145509) | |
| 62-237, gnl|rheMac2|chr7 (69508916-69509051) | |
| 62-237, gnl|rn3|chr2 (119820683-119820813) | |
| 467-672, gnl|bosTau2|chr17 (27880666-27880871) | |
| 467-672, gnl|canFam2|chr26 (9894215-9894064) | |
| 467-672, gnl|danRer3|chr17 (38934363-38934458) | |
| 467-672, gnl|dasNov1|scaffold_2337 (123180-123035) | |
| 467-672, gnl|fr1|chrUn (72443768-72443913) | |
| 467-672, gnl|galGal2|chr15 (5852962-5853096) | |
| 467-672, gnl|hg17|chr12 (121526631-121526782) | |
| 467-672, gnl|Hg17|chr12 (121526859-121526654) | |
| 467-672, gnl|loxAfr1|scaffold_674 (92637-92788) | |
| 467-672, gnl|mm7|chr5 (122985313-122985464) | |
| 467-672, gnl|Mm7|chr5 (122985541-122985336) | |
| 467-672, gnl|monDom2|scaffold_97 (2819090-2819215) | |
| 467-672, gnl|oryCun1|scaffold_204678 (25218-25067) | |
| 467-672, gnl|panTro1|chr10 (124598866-124599017) | |
| 467-672, gnl|rheMac2|chr11 (123759090-123759241) | |
| 467-672, gnl|rn3|chr12 (33850917-33850766) | |
| 467-672, gnl|xenTro1|scaffold_100 (1536210-1536282) | |
| 873-1107, gnl|bosTau2|chr17 (27885816-27886050) | |
| 873-1107, gnl|canFam2|chr26 (9902136-9901901) | |
| 873-1107, gnl|danRer3|chr17 (38931917-38932152) | |
| 873-1107, gnl|dasNov1|scaffold_2337 (130360-130125) | |
| 873-1107, gnl|echTel1|scaffold_309476 (49988-50223) | |
| 873-1107, gnl|fr1|chrUn (72442980-72443215) | |
| 873-1107, gnl|galGal2|chr15 (5848875-5849110) | |
| 873-1107, gnl|hg17|chr12 (121517643-121517878) | |
| 873-1107, gnl|Hg17|chr12 (121517881-121517646) | |
| 873-1107, gnl|loxAfr1|scaffold_674 (84945-85180) | |
| 873-1107, gnl|mm7|chr5 (122976879-122977114) | |
| 873-1107, gnl|Mm7|chr5 (122977114-122976882) | |
| 873-1107, gnl|monDom2|scaffold_97 (2812862-2813097) | |
| 873-1107, gnl|oryCun1|scaffold_204678 (31233-30998) | |
| 873-1107, gnl|panTro1|chr10 (124589917-124590156) | |
| 873-1107, gnl|rheMac2|chr11 (123750356-123750591) | |
| 873-1107, gnl|rn3|chr12 (33858046-33857811) | |
| 873-1107, gnl|tetNig1|chr12 (7007652-7007417) | |
| 873-1107, gnl|xenTro1|scaffold_100 (1532251-1532486) | |
| 1197-2580, gnl|bosTau2|chr17 (27887522-27888893) | |
| 1197-2580, gnl|Hg17|chr12 (121515135-121513058) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| liv (1.17027) | |
| tbr (0.616713) | |
| pro (0.512033) | |
| ret (0.3862) | |
| lin (0.291206) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| kid (0.259471) | |
| thg (0.253582) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ova (0.129132) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.17027) | |
| tbr (0.616713) | |
| pro (0.512033) | |
| ret (0.3862) | |
| lin (0.291206) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| kid (0.259471) | |
| thg (0.253582) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ova (0.129132) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |