Non-Coding RNA Search

Ss1.1-rpliv0115_p12.5

Sequence:


               
               TGTTTTCTCAATTTCGTTTCTCCTTCATTAAATCAACAAATATTTATTGCGCATACAGTG
TGAGCTAGACAGTCTTTTAGGTCTTGATATACAGCAGACAAGATCCAGTCCTTGGCCCTA
GAGAGCATATGGTATTGATACAGTATGGGGCAACTGCTTTTGGATTGGAGAAGATATATG
AGATCTGTGTAGTTCTACCACTGCTCAAGAAATTTATTAACTTTGCCTTCCTCATAGGGA
TACAATGGGAAGTGACCGTTATAACCAGTTGTGGGGCATTTGGAAATGAGAAGTGCTATA
AAACTGCTGAATAATAGAAAGAAAGATTAAATTATATGGTGGAAATGGTACTTATGTCAT
TGCTCTAGGACTGCTACTAGGAAAAGCTAAATTAGGTAAATACGACTGCCTAGCTTCTGC
GAGATCGAGAAAAAAATCTGTGTATTAGCAAGACGGATTGCAGAATCTTACATTATTTTA
TGTATTACATGAACTAAATATAGTTGGAAACTCCACACATATAGTATGGAATTTCCACAC
ATCTACAGCTTCTATTAAGAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTCTCAATTTCGTTTCTCCTTCATTAAATCAACAAATATTTATTGCGCATACAGTG
TGAGCTAGACAGTCTTTTAGGTCTTGATATACAGCAGACAAGATCCAGTCCTTGGCCCTA
GAGAGCATATGGTATTGATACAGTATGGGGCAACTGCTTTTGGATTGGAGAAGATATATG
AGATCTGTGTAGTTCTACCACTGCTCAAGAAATTTATTAACTTTGCCTTCCTCATAGGGA
TACAATGGGAAGTGACCGTTATAACCAGTTGTGGGGCATTTGGAAATGAGAAGTGCTATA
AAACTGCTGAATAATAGAAAGAAAGATTAAATTATATGGTGGAAATGGTACTTATGTCAT
TGCTCTAGGACTGCTACTAGGAAAAGCTAAATTAGGTAAATACGACTGCCTAGCTTCTGC
GAGATCGAGAAAAAAATCTGTGTATTAGCAAGACGGATTGCAGAATCTTACATTATTTTA
TGTATTACATGAACTAAATATAGTTGGAAACTCCACACATATAGTATGGAATTTCCACAC
ATCTACAGCTTCTATTAAGAACAT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-346, gnl|bosTau2|chr27 (14140170-14140511)
               

               
               3-346, gnl|canFam2|chr16 (36289767-36288771)
               

               
               3-346, gnl|dasNov1|scaffold_8174 (4336-5315)
               

               
               3-346, gnl|hg17|chr8 (30978197-30979271)
               

               
               3-346, gnl|Hg17|chr8 (30978730-30978388)
               

               
               3-346, gnl|loxAfr1|scaffold_60880 (42107-40970)
               

               
               3-346, gnl|mm7|chr8 (32179966-32179201)
               

               
               3-346, gnl|Mm7|chr8 (32179612-32179921)
               

               
               3-346, gnl|panTro1|chr7 (32067785-32068855)
               

               
               3-346, gnl|rheMac2|chr8 (31262314-31263370)
               

               
               3-346, gnl|rn3|chr16 (62509782-62510620)
               


               
               348-564, gnl|bosTau2|chr27 (14140563-14140773)
               

               
               348-564, gnl|Hg17|chr8 (30978337-30978123)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-346, gnl|bosTau2|chr27 (14140170-14140511)
               

               
               3-346, gnl|canFam2|chr16 (36289767-36288771)
               

               
               3-346, gnl|dasNov1|scaffold_8174 (4336-5315)
               

               
               3-346, gnl|hg17|chr8 (30978197-30979271)
               

               
               3-346, gnl|Hg17|chr8 (30978730-30978388)
               

               
               3-346, gnl|loxAfr1|scaffold_60880 (42107-40970)
               

               
               3-346, gnl|mm7|chr8 (32179966-32179201)
               

               
               3-346, gnl|Mm7|chr8 (32179612-32179921)
               

               
               3-346, gnl|panTro1|chr7 (32067785-32068855)
               

               
               3-346, gnl|rheMac2|chr8 (31262314-31263370)
               

               
               3-346, gnl|rn3|chr16 (62509782-62510620)
               


               
               348-564, gnl|bosTau2|chr27 (14140563-14140773)
               

               
               348-564, gnl|Hg17|chr8 (30978337-30978123)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	3-346, gnl\|bosTau2\|chr27 (14140170-14140511)
	3-346, gnl\|canFam2\|chr16 (36289767-36288771)
	3-346, gnl\|dasNov1\|scaffold_8174 (4336-5315)
	3-346, gnl\|hg17\|chr8 (30978197-30979271)
	3-346, gnl\|Hg17\|chr8 (30978730-30978388)
	3-346, gnl\|loxAfr1\|scaffold_60880 (42107-40970)
	3-346, gnl\|mm7\|chr8 (32179966-32179201)
	3-346, gnl\|Mm7\|chr8 (32179612-32179921)
	3-346, gnl\|panTro1\|chr7 (32067785-32068855)
	3-346, gnl\|rheMac2\|chr8 (31262314-31263370)
	3-346, gnl\|rn3\|chr16 (62509782-62510620)

	348-564, gnl\|bosTau2\|chr27 (14140563-14140773)
	348-564, gnl\|Hg17\|chr8 (30978337-30978123)