Non-Coding RNA Search

Ss1.1-rpliv0116_k23.5

Sequence:


               
               GTTTATATAATGCAGTTTTTACATCTGTGTTTAAAAATGGAGTTCCTATGGGCTTAACAC
ATGAAATGGGTGGCACAGACCCACTTGCAGAACCCAAAGATACACAATCAATTTTGAAAT
GCAATTTAAGCCATTAATTGTTGGTGTGAATTTAAAATTTTCTAGTATTTGTATGGTAGT
ATGCTGCCTAAGAGCAAAGCATTCTCTGCACAAAAGAAAATTACTGTAGTGGCTTCGATT
TTAATTAGAATTTTCTCCCTGGTGTTTCTTTATAGACTAAAACAAAATCTTTTAAGTTTC
TTACTACAGGTAAAAGCTATGTGCAAGAACCTCAAAATGCTAAAATCTAGCATAATGCCT
TAGATCTGTTTTTAAGTCTTGTATATTCCTACATAGCTGTCCAATGTATTATATTTGTAT
AGTGAATTGTGTACAATTTTTTGAATAAGTGCATCATCACTTAACCTTTATGTTGTTGAA
TAGTGATGATGATACATTTCTTCAAACATGTAACTGTCTTTTTTTTTTCTTATGCCATTT
GTGGGTTTTATTTGTACAGTTCCTCATGAAGTTGCATCTGAGATGTGTGTATATGAAAAG
ATTATACAAGGGTAAAATTAAGCAATATATTAACTATGGTTCTTCAGGAGAAAGCTTACC
GTGTTTCAGGTTGTGATTTATTTTCAAAACGGAGTTGACTCCGAACATCACTTTGTCTTT
CACTTGCATTGATGTTTGTATTTCTAGTGTGAGCAGTTTATGCAAAGGTAGATATATTCA
GAGAAATTTTAAATACATTTATGCAAGTTAATATTGCTTTGCTGATGCTATTTGCTTATT
TGATGTTAAATAATGCTATTGTAAATAAAGAATCCTGTTGTTATTGCATCATTTAATAAA
TTTTAATGCCTTCGGGTTTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATATAATGCAGTTTTTACATCTGTGTTTAAAAATGGAGTTCCTATGGGCTTAACAC
ATGAAATGGGTGGCACAGACCCACTTGCAGAACCCAAAGATACACAATCAATTTTGAAAT
GCAATTTAAGCCATTAATTGTTGGTGTGAATTTAAAATTTTCTAGTATTTGTATGGTAGT
ATGCTGCCTAAGAGCAAAGCATTCTCTGCACAAAAGAAAATTACTGTAGTGGCTTCGATT
TTAATTAGAATTTTCTCCCTGGTGTTTCTTTATAGACTAAAACAAAATCTTTTAAGTTTC
TTACTACAGGTAAAAGCTATGTGCAAGAACCTCAAAATGCTAAAATCTAGCATAATGCCT
TAGATCTGTTTTTAAGTCTTGTATATTCCTACATAGCTGTCCAATGTATTATATTTGTAT
AGTGAATTGTGTACAATTTTTTGAATAAGTGCATCATCACTTAACCTTTATGTTGTTGAA
TAGTGATGATGATACATTTCTTCAAACATGTAACTGTCTTTTTTTTTTCTTATGCCATTT
GTGGGTTTTATTTGTACAGTTCCTCATGAAGTTGCATCTGAGATGTGTGTATATGAAAAG
ATTATACAAGGGTAAAATTAAGCAATATATTAACTATGGTTCTTCAGGAGAAAGCTTACC
GTGTTTCAGGTTGTGATTTATTTTCAAAACGGAGTTGACTCCGAACATCACTTTGTCTTT
CACTTGCATTGATGTTTGTATTTCTAGTGTGAGCAGTTTATGCAAAGGTAGATATATTCA
GAGAAATTTTAAATACATTTATGCAAGTTAATATTGCTTTGCTGATGCTATTTGCTTATT
TGATGTTAAATAATGCTATTGTAAATAAAGAATCCTGTTGTTATTGCATCATTTAATAAA
TTTTAATGCCTTCGGGTTTTACAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-556, - strand, RNAz p=0.952601
               

               
               677-834, + strand, RNAz p=0.839907

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-556, - strand, RNAz p=0.952601
               

               
               677-834, + strand, RNAz p=0.839907

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               421-518, + strand, RNAmicro p=0.95931

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               421-518, + strand, RNAmicro p=0.95931

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr11 (50455870-50454985)
               

               
               1-888, gnl|Hg17|chr8 (71185485-71184604)
               

               
               1-888, gnl|Mm7|chr1 (13286348-13285469)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr11 (50455870-50454985)
               

               
               1-888, gnl|Hg17|chr8 (71185485-71184604)
               

               
               1-888, gnl|Mm7|chr1 (13286348-13285469)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               liv (0.585137)
               

               
               tes (0.207814)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               tes (0.207814)
               

               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

	280-556, - strand, RNAz p=0.952601
	677-834, + strand, RNAz p=0.839907

	1-888, gnl\|bosTau2\|chr11 (50455870-50454985)
	1-888, gnl\|Hg17\|chr8 (71185485-71184604)
	1-888, gnl\|Mm7\|chr1 (13286348-13285469)

	liv (0.585137)
	tes (0.207814)
	mcp (0.170648)
	pla (0.133672)
	ret (0.128733)