Non-Coding RNA Search

Ss1.1-rpliv0116_l23.5

Sequence:


               
               TTCCCCTTCCCTCCACGGTGGCATTTTTAACGGGCAGACCCCGTAACTTCGAGGCGGCGT
CTGCCACAGTTCCTGCGGTCGCTGCCCGGGCCCTGGTCCGCCCATCGTCATGAGAGGAGA
CAGAGCCTTGAAGCCAAGAACTCTGAATCACAGAAAAAGTATTCCAGGGTCATGCAAGCC
AACTGTAGCCAACTGCACAGTTCTCCACAAACTGCAGGTGGTGAGGATGCCTCAGTCTCC
CAGTGTGTCCAAACGAGATTGACAGGAGAAGCCTCCTGTCTTTATTCTGGAGATGTTCAT
ATCCAGATAAACACCATACCTAAAGAATGTGCTGAAAATCCAAGCTCCAGAAATGTGAGA
TCAGGTGTCCATAGCTGTACCCATGGATGTGTTCATAGTCGCTTACGGAGTCACTCCCAC
AATGAAGCAAGGCAGCCTGATGATAACGACACAGAGTCTGGCGATCATGGTAGTAGCTCC
TTCTCAGAATTCCGATATCTCTTCAAGTGGCTGCAAAAAAGTCTTCCATATATTTTGATT
CTGGGTGTCAAACTTGTTATGCAGCATATTACAGGAATTTCTCTTGGAATTGGGCTGCTT
ACAACTTTTATATATGCAAACAAAAGCATTATAAATCAGGTTTTTCTAAGAGAGAGGTGC
TCAAAGATCCAGTGTGCTTGGTTACTGGTATTCTTGGCAGGATCTTCTGTTCTTTTGTAT
TACACCTTTCACTCTCAGTCACTTTATTACAGCTTAATTTTTTTAAATCCCACTTTGGAC
TATTCGAGTTTCTGGGAAGTACTTTGGATTGTTGGAATTACAGACTTCATTTTGAAATTC
CTCTTCATGGGCTTAAAATGCCTTATTTTATTGGTGCCTTCTTTCGTCATGCCTTTTAAA
TCCAAGGGTTATTGGTATATGCTTTTAGAAGAGTTATGTCAGTATTACCGAACGTTTGTT
CCCATACCAGTTTGGTTCCGTTACCTTATAAGCTATGGGGAGTTTGGTAATGTAACTAGA
TGGAGTCTTGGAATATTGCTGGCTTTACTCTACCTCATACTAAAACTTCTGGACTTTTTT
GGACATCTGAAAACTTTCACACGGGTTTTGCGAATATTTTTTACACGACCAAGTTATGGA
GTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCT
GAATTTCAAAAGCCAATTCTTCTCATCTGTCAGCATATATTTTGTGAAGAGTGCATTACT
TTATGGTTTAACCGAGAGAAAACATGTCCGCTGTGTAGAACCATGATTTCAGACCACATA
AACAAGTGGAAAGATGGAGCTACTTCATCTCATCTTCAAATATATTAAATTCAAAACTTA
ATATTAAGACTACAAAACACTAATTTTATTTGGTTACAGTGACTATGGATAAAGACACTA
GAATGGATTTTCAGGGCTAGAAGTTAATGAAAATGTTTCCAAATGGTTTTAGATTATAGT
AATAAATTGTATAGTCCAGTTTATTAAGAGTAAATCAAAAAACCCTATATTTAAATATAT
ATAAGTAATGTTCAACCCAATGTATATGCAACATGTATTCTATCCTCATTATTTGACAGA
TTGCAGTGTTAAATTGTAAATGTTTTCTTGTTAATGTTACCAAAATGACAACTGAGTAAC
TAGAACTAGGGTTTAAGAGGAATGCAGATATCCTTTCCTGACACTGTTTTCAAAATAAAC
AATATTTTTCATAATATTTTAAGATATATATTACCTGAAAGAATTTTCTTTAGCATTGAC
TTTTTTAATTCCCATTCTAAAAATCCTAAAATTTTTCATGAAATTTGTATTTTTAAATGA
AAATTTAAATGCTGTATTTTATTTGTACAATCAGATTTTTAAAGGAAGATAAATTTATTA
AGGATGAAATATTTTAATATTGTATTATTCTCTACAGTATGATTAACAGTCATTCAGAAC
AGATGATTTAAATTCCTTTTCTTTGTGGATATCACACATACAATCCTGCTATCAGCTTTA
ATGTTCTTGATCTTGCTTTTTGTACAGTGTCATGGACTTTCTATTAAAATAATTCACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCTTCCCTCCACGGTGGCATTTTTAACGGGCAGACCCCGTAACTTCGAGGCGGCGT
CTGCCACAGTTCCTGCGGTCGCTGCCCGGGCCCTGGTCCGCCCATCGTCATGAGAGGAGA
CAGAGCCTTGAAGCCAAGAACTCTGAATCACAGAAAAAGTATTCCAGGGTCATGCAAGCC
AACTGTAGCCAACTGCACAGTTCTCCACAAACTGCAGGTGGTGAGGATGCCTCAGTCTCC
CAGTGTGTCCAAACGAGATTGACAGGAGAAGCCTCCTGTCTTTATTCTGGAGATGTTCAT
ATCCAGATAAACACCATACCTAAAGAATGTGCTGAAAATCCAAGCTCCAGAAATGTGAGA
TCAGGTGTCCATAGCTGTACCCATGGATGTGTTCATAGTCGCTTACGGAGTCACTCCCAC
AATGAAGCAAGGCAGCCTGATGATAACGACACAGAGTCTGGCGATCATGGTAGTAGCTCC
TTCTCAGAATTCCGATATCTCTTCAAGTGGCTGCAAAAAAGTCTTCCATATATTTTGATT
CTGGGTGTCAAACTTGTTATGCAGCATATTACAGGAATTTCTCTTGGAATTGGGCTGCTT
ACAACTTTTATATATGCAAACAAAAGCATTATAAATCAGGTTTTTCTAAGAGAGAGGTGC
TCAAAGATCCAGTGTGCTTGGTTACTGGTATTCTTGGCAGGATCTTCTGTTCTTTTGTAT
TACACCTTTCACTCTCAGTCACTTTATTACAGCTTAATTTTTTTAAATCCCACTTTGGAC
TATTCGAGTTTCTGGGAAGTACTTTGGATTGTTGGAATTACAGACTTCATTTTGAAATTC
CTCTTCATGGGCTTAAAATGCCTTATTTTATTGGTGCCTTCTTTCGTCATGCCTTTTAAA
TCCAAGGGTTATTGGTATATGCTTTTAGAAGAGTTATGTCAGTATTACCGAACGTTTGTT
CCCATACCAGTTTGGTTCCGTTACCTTATAAGCTATGGGGAGTTTGGTAATGTAACTAGA
TGGAGTCTTGGAATATTGCTGGCTTTACTCTACCTCATACTAAAACTTCTGGACTTTTTT
GGACATCTGAAAACTTTCACACGGGTTTTGCGAATATTTTTTACACGACCAAGTTATGGA
GTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCT
GAATTTCAAAAGCCAATTCTTCTCATCTGTCAGCATATATTTTGTGAAGAGTGCATTACT
TTATGGTTTAACCGAGAGAAAACATGTCCGCTGTGTAGAACCATGATTTCAGACCACATA
AACAAGTGGAAAGATGGAGCTACTTCATCTCATCTTCAAATATATTAAATTCAAAACTTA
ATATTAAGACTACAAAACACTAATTTTATTTGGTTACAGTGACTATGGATAAAGACACTA
GAATGGATTTTCAGGGCTAGAAGTTAATGAAAATGTTTCCAAATGGTTTTAGATTATAGT
AATAAATTGTATAGTCCAGTTTATTAAGAGTAAATCAAAAAACCCTATATTTAAATATAT
ATAAGTAATGTTCAACCCAATGTATATGCAACATGTATTCTATCCTCATTATTTGACAGA
TTGCAGTGTTAAATTGTAAATGTTTTCTTGTTAATGTTACCAAAATGACAACTGAGTAAC
TAGAACTAGGGTTTAAGAGGAATGCAGATATCCTTTCCTGACACTGTTTTCAAAATAAAC
AATATTTTTCATAATATTTTAAGATATATATTACCTGAAAGAATTTTCTTTAGCATTGAC
TTTTTTAATTCCCATTCTAAAAATCCTAAAATTTTTCATGAAATTTGTATTTTTAAATGA
AAATTTAAATGCTGTATTTTATTTGTACAATCAGATTTTTAAAGGAAGATAAATTTATTA
AGGATGAAATATTTTAATATTGTATTATTCTCTACAGTATGATTAACAGTCATTCAGAAC
AGATGATTTAAATTCCTTTTCTTTGTGGATATCACACATACAATCCTGCTATCAGCTTTA
ATGTTCTTGATCTTGCTTTTTGTACAGTGTCATGGACTTTCTATTAAAATAATTCACATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57091201|ref|XP_537703.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57091201|ref|XP_537703.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               201-316, - strand, RNAz p=0.90121
               

               
               901-1020, + strand, RNAz p=0.630083

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-316, - strand, RNAz p=0.90121
               

               
               901-1020, + strand, RNAz p=0.630083

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               51-1899, gnl|bosTau2|chr11 (60193440-60191592)
               

               
               51-1899, gnl|Hg17|chr2 (20106655-20104925)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-1899, gnl|bosTau2|chr11 (60193440-60191592)
               

               
               51-1899, gnl|Hg17|chr2 (20106655-20104925)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               bfe (0.899146)
               

               
               tra (0.738552)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.899146)
               

               
               tra (0.738552)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	201-316, - strand, RNAz p=0.90121
	901-1020, + strand, RNAz p=0.630083

	51-1899, gnl\|bosTau2\|chr11 (60193440-60191592)
	51-1899, gnl\|Hg17\|chr2 (20106655-20104925)

	bfe (0.899146)
	tra (0.738552)
	ret (0.643666)
	liv (0.585137)
	kid (0.389206)
	sug (0.381874)
	isp (0.300752)
	thg (0.253582)
	mgp (0.230681)
	nms (0.213858)
	fco (0.157208)
	lun (0.150489)
	ski (0.146735)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)