Non-Coding RNA Search

Ss1.1-rpliv0116_l3.5.5

Sequence:


               
               CACATACACGTTTGCTGTGAGACAGACTTCATTGCACATCTTTTGGGTCGTGCTGAGCCA
GAGTTCGCAGGAGGGAGAAGAGAAAGGCATGCTAAGACAATAGATATAGCTCAAGAAGAA
GTTCTGACCTGCTTGGGAATTCATATGCTTTTCTATCTTGGTGTTGATGCTTTACGCAAG
AGTTTTGAGATGACTGTGGAAAAAGTACAGGGTATTAGTCGATTGGAACAACTTTGTGAA
GAATTTTCAGAGACTGTGGAAAAAGTACAGGGTATTAGTCGATTGGAACAACTTTGTGAA
GAATTTTCAGAGGAGGAACGAGTAAGAGAACTCAAGCAAGAAAAGAAGCGCCAAAAACGG
AAGAATAGACGAAAAAATAAATGTGAAACAGACTTCATAGAAAACAGCTGCAAAGCCTGT
GGCAGCACTGAAGATGGCAATAGTTGTGTAGAAGTAATTGTTACCAATGAAAATACATCA
TGTACCTGTCCTAGCAGTGGCAATCTCTTGGGGTCCCCTAAAATAAAGAAAGGCTTATCT
CCACACTGTAATGGTAGTGATTGTGGCTATTCATCTAGCATGGAAGGGAGTGAAACAGGT
TCTCGAGAGGGTTCGGATGTTGCCTGCACTGAAGGCATTTGTAATCATGACGAACACGGT
GATGATTCCTGTGTTCATCACTGTGAAGACAAAGAGGATGATGGCGATAGTTGTGTTGAA
TGTTGGGCAAATTCTGAAGAGAACAACACCAAAGGAAAAAATAAAAAGAAGAAAAAGAAA
AGCAAGATGTTGAAATGTGATGAACACATCCAAAAGCTTGGAGGCTGTATTACAGATCCA
GGTAATCGAGAGACCTCAGGAAATACCATGCACACAGTGTTTCACCGCGACAAGACCAAA
GATGCACATCCTGAAAGCTGTTGCAGCTCTGAAAAGGGTGGGCAGCCACTCCCTTGGTTT
GAGCATAGGAAAAACGTACCACAGTTTGCAGAACCTACAGAAACGTCGTTTGGTCCTGAT
TCTGGAAAAGGTGCCAAGAGCTTAGTTGAACTCCTTGATGAGTCTGAATGTACTTCAGAT
GAGGAAATCTTTATCTCACAAGATGAAATACAGTCATTTATGGCTAATAACCAGTCTTTC
TACAGCAATAGAGAACAATACCGACAGCATCTGAAGGAGAAATTTAATAAATACTGCCGC
TTAAATGATCACAAGAGGCCCATTTGTAGTGGCTGGTTGACAACGGCTGGAGCAAATTAA
ATAAATAAAATAGCTCTGTCTTTCAATGAAACACTCAAGATGACTACTGCGCCTTCTCTT
TCAAAAAAAAAACTCTTAATTTAGTGACTTATGGCAAAATTTTATCTTAAATCAATGTGA
TTCTTTCTTGTTTGGGGAGACGGTGGAGGTAACCTCATTAGTTTGTTCTTTCTTCAGGCT
TGTGTCTTTAGTTGTGTGGCTGCGCAGGCCTGCCGTATGATTTAAGCCATCTCTTTTCAT
TAAATGTTTCTCTTCCTGTGAGACTTGCTAAAAAGCAACTTAGTGGCAAAAAGTAATGTT
GTACTTATACTTCTGTACAGAAATGACAATGAGCTGAATATATGGTTTTACAAAGTAGAC
ATCCACTTGCGAAATGTTTGGATGTAATGTTAAAGCGCAATGTGCAAAATTTAAAATAAA
GAATATTTATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATACACGTTTGCTGTGAGACAGACTTCATTGCACATCTTTTGGGTCGTGCTGAGCCA
GAGTTCGCAGGAGGGAGAAGAGAAAGGCATGCTAAGACAATAGATATAGCTCAAGAAGAA
GTTCTGACCTGCTTGGGAATTCATATGCTTTTCTATCTTGGTGTTGATGCTTTACGCAAG
AGTTTTGAGATGACTGTGGAAAAAGTACAGGGTATTAGTCGATTGGAACAACTTTGTGAA
GAATTTTCAGAGACTGTGGAAAAAGTACAGGGTATTAGTCGATTGGAACAACTTTGTGAA
GAATTTTCAGAGGAGGAACGAGTAAGAGAACTCAAGCAAGAAAAGAAGCGCCAAAAACGG
AAGAATAGACGAAAAAATAAATGTGAAACAGACTTCATAGAAAACAGCTGCAAAGCCTGT
GGCAGCACTGAAGATGGCAATAGTTGTGTAGAAGTAATTGTTACCAATGAAAATACATCA
TGTACCTGTCCTAGCAGTGGCAATCTCTTGGGGTCCCCTAAAATAAAGAAAGGCTTATCT
CCACACTGTAATGGTAGTGATTGTGGCTATTCATCTAGCATGGAAGGGAGTGAAACAGGT
TCTCGAGAGGGTTCGGATGTTGCCTGCACTGAAGGCATTTGTAATCATGACGAACACGGT
GATGATTCCTGTGTTCATCACTGTGAAGACAAAGAGGATGATGGCGATAGTTGTGTTGAA
TGTTGGGCAAATTCTGAAGAGAACAACACCAAAGGAAAAAATAAAAAGAAGAAAAAGAAA
AGCAAGATGTTGAAATGTGATGAACACATCCAAAAGCTTGGAGGCTGTATTACAGATCCA
GGTAATCGAGAGACCTCAGGAAATACCATGCACACAGTGTTTCACCGCGACAAGACCAAA
GATGCACATCCTGAAAGCTGTTGCAGCTCTGAAAAGGGTGGGCAGCCACTCCCTTGGTTT
GAGCATAGGAAAAACGTACCACAGTTTGCAGAACCTACAGAAACGTCGTTTGGTCCTGAT
TCTGGAAAAGGTGCCAAGAGCTTAGTTGAACTCCTTGATGAGTCTGAATGTACTTCAGAT
GAGGAAATCTTTATCTCACAAGATGAAATACAGTCATTTATGGCTAATAACCAGTCTTTC
TACAGCAATAGAGAACAATACCGACAGCATCTGAAGGAGAAATTTAATAAATACTGCCGC
TTAAATGATCACAAGAGGCCCATTTGTAGTGGCTGGTTGACAACGGCTGGAGCAAATTAA
ATAAATAAAATAGCTCTGTCTTTCAATGAAACACTCAAGATGACTACTGCGCCTTCTCTT
TCAAAAAAAAAACTCTTAATTTAGTGACTTATGGCAAAATTTTATCTTAAATCAATGTGA
TTCTTTCTTGTTTGGGGAGACGGTGGAGGTAACCTCATTAGTTTGTTCTTTCTTCAGGCT
TGTGTCTTTAGTTGTGTGGCTGCGCAGGCCTGCCGTATGATTTAAGCCATCTCTTTTCAT
TAAATGTTTCTCTTCCTGTGAGACTTGCTAAAAAGCAACTTAGTGGCAAAAAGTAATGTT
GTACTTATACTTCTGTACAGAAATGACAATGAGCTGAATATATGGTTTTACAAAGTAGAC
ATCCACTTGCGAAATGTTTGGATGTAATGTTAAAGCGCAATGTGCAAAATTTAAAATAAA
GAATATTTATTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55645249|ref|XP_511424.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645249|ref|XP_511424.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1351-1637, gnl|bosTau2|chr23 (1153008-1152714)
               

               
               1351-1637, gnl|Hg17|chr17 (32020041-32020321)
               

               
               1351-1637, gnl|Mm7|chr11 (84902831-84902555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1351-1637, gnl|bosTau2|chr23 (1153008-1152714)
               

               
               1351-1637, gnl|Hg17|chr17 (32020041-32020321)
               

               
               1351-1637, gnl|Mm7|chr11 (84902831-84902555)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

Help | Less info


               
               cte (1.75644)
               

               
               tes (0.831255)
               

               
               ret (0.643666)
               

               
               aor (0.585823)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.75644)
               

               
               tes (0.831255)
               

               
               ret (0.643666)
               

               
               aor (0.585823)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1351-1637, gnl\|bosTau2\|chr23 (1153008-1152714)
	1351-1637, gnl\|Hg17\|chr17 (32020041-32020321)
	1351-1637, gnl\|Mm7\|chr11 (84902831-84902555)

	cte (1.75644)
	tes (0.831255)
	ret (0.643666)
	aor (0.585823)
	lin (0.582411)
	sin (0.524843)
	rec (0.519211)
	pro (0.512033)
	mgp (0.461361)
	lyg (0.399308)
	thg (0.380373)
	sag (0.36543)
	sme (0.305437)
	liv (0.292569)
	pty (0.285429)
	fce (0.271592)
	kid (0.259471)
	ova (0.258264)
	ebs (0.236602)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	gul (0.177588)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	nmm (0.132802)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)