Non-Coding RNA Search

Ss1.1-rpliv0117_a11.5

Sequence:


               
               TGTGTCTACCACCTGGTGTGAAATAAAATCAAGTAATACAATCTTAACTGTTGTGGCCTT
CTTTGATCAAAAGAGTTGGTATTAAGGCCAAAAATTAACAGTTTATAGACCTTTTAGTTT
CAACTCAGCTTTTACATTCAAAAGAATGTACATTGTGTTGAATTGACTTTTGGTTTGTGA
AATTCATAGTGGATCTATAGTCTTCTAACCAAATGTCTGGACTGGTTTGGTTTTTTTTTT
TCCCCAACCCCAATGATACTTCTCTTTCCCCTTTTTCTTTTACTTCTAATAACTTATCTT
GTCATGTTCAGCTTTTATTTTGCTTTTTGCTCTTTTTCTTGAATATATTATGCTAATTTG
GAAAGTCCGAAACTGTCAAAATGTTAGTTAATAAGGTACTTGTAATTAAAATATGAGACT
ACAATCACTAATTCTACTGTATTAAATATTAGAAGATATAGTTTGATAAACAACATGGCT
TGTATGAAAACTGAGCAAGTAAGTGTATGTCATTAACTGTAGTGTTCTGTGTAGTTACTG
CTTAGTCTGCAGAAATTAATGACTTCGATGTCTGATTTGCTTTCACTTATATTCACCATG
GGATGATGTCTATAAAATCAGATACTGTTAAATTAGATTAGGATTTAATAAAAATTATGA
AAGCTTACTGGCCTAACATTTTATTTTATAACATTGAGTATGGATTATATATATAGCCAG
AGATATCACTGAGCTTTATTCTCATGGTAGATGTTGTGGTCAGTTTTTAGAGGAAAGAAC
ATATAGAGCATATACTTGTGTTTTTTGGCCTTTGCTTCAGTAGACTTGGTTCTTTTGCAG
TTAATCTACTGAACGATGGCATTCTAGACTTAATGTTACTAAGTTTTAGCACTCTGAAGT
GGTTTTCATTGAACCATAATGATGAAGCAGACACAGATTGAGGCACAGATTTCAGGGGCT
TTGCAGCAATAAATAGGGCATGGCGTGCCTTAGGAAAAGAGTGTAGGTAGGGGAACTATA
ACAAATTAAAGAAAGTGGCAGTGAAGAAGGAATTGTCTTCACACTAAATGATATCACATG
ATATTTTGATCACATTGTAAGACACAGTTCTAGATAGAATAGTAAAAAGAGAGGTTTAAC
GACATGTAAAAAAATTCTTGATGACTTTATTTTTGGTAGTTAATCTCAGTGGTTACTGCC
GTATCAGAGAGTTGCGCTGTTATGCCAAGTTTGATTGCTATATCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTCTACCACCTGGTGTGAAATAAAATCAAGTAATACAATCTTAACTGTTGTGGCCTT
CTTTGATCAAAAGAGTTGGTATTAAGGCCAAAAATTAACAGTTTATAGACCTTTTAGTTT
CAACTCAGCTTTTACATTCAAAAGAATGTACATTGTGTTGAATTGACTTTTGGTTTGTGA
AATTCATAGTGGATCTATAGTCTTCTAACCAAATGTCTGGACTGGTTTGGTTTTTTTTTT
TCCCCAACCCCAATGATACTTCTCTTTCCCCTTTTTCTTTTACTTCTAATAACTTATCTT
GTCATGTTCAGCTTTTATTTTGCTTTTTGCTCTTTTTCTTGAATATATTATGCTAATTTG
GAAAGTCCGAAACTGTCAAAATGTTAGTTAATAAGGTACTTGTAATTAAAATATGAGACT
ACAATCACTAATTCTACTGTATTAAATATTAGAAGATATAGTTTGATAAACAACATGGCT
TGTATGAAAACTGAGCAAGTAAGTGTATGTCATTAACTGTAGTGTTCTGTGTAGTTACTG
CTTAGTCTGCAGAAATTAATGACTTCGATGTCTGATTTGCTTTCACTTATATTCACCATG
GGATGATGTCTATAAAATCAGATACTGTTAAATTAGATTAGGATTTAATAAAAATTATGA
AAGCTTACTGGCCTAACATTTTATTTTATAACATTGAGTATGGATTATATATATAGCCAG
AGATATCACTGAGCTTTATTCTCATGGTAGATGTTGTGGTCAGTTTTTAGAGGAAAGAAC
ATATAGAGCATATACTTGTGTTTTTTGGCCTTTGCTTCAGTAGACTTGGTTCTTTTGCAG
TTAATCTACTGAACGATGGCATTCTAGACTTAATGTTACTAAGTTTTAGCACTCTGAAGT
GGTTTTCATTGAACCATAATGATGAAGCAGACACAGATTGAGGCACAGATTTCAGGGGCT
TTGCAGCAATAAATAGGGCATGGCGTGCCTTAGGAAAAGAGTGTAGGTAGGGGAACTATA
ACAAATTAAAGAAAGTGGCAGTGAAGAAGGAATTGTCTTCACACTAAATGATATCACATG
ATATTTTGATCACATTGTAAGACACAGTTCTAGATAGAATAGTAAAAAGAGAGGTTTAAC
GACATGTAAAAAAATTCTTGATGACTTTATTTTTGGTAGTTAATCTCAGTGGTTACTGCC
GTATCAGAGAGTTGCGCTGTTATGCCAAGTTTGATTGCTATATCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               785-899, - strand, RNAz p=0.910575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               785-899, - strand, RNAz p=0.910575

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1248, gnl|bosTau2|chr20 (26546280-26547536)
               

               
               1-1248, gnl|Hg17|chr5 (32637150-32638412)
               

               
               1-1248, gnl|Mm7|chr15 (12044117-12043045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1248, gnl|bosTau2|chr20 (26546280-26547536)
               

               
               1-1248, gnl|Hg17|chr5 (32637150-32638412)
               

               
               1-1248, gnl|Mm7|chr15 (12044117-12043045)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fco (0.628832)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-1248, gnl\|bosTau2\|chr20 (26546280-26547536)
	1-1248, gnl\|Hg17\|chr5 (32637150-32638412)
	1-1248, gnl\|Mm7\|chr15 (12044117-12043045)

	fco (0.628832)
	mgp (0.230681)
	ece (0.229305)
	hea (0.204499)
	eje (0.197668)
	mcp (0.170648)
	fhi (0.169578)
	liv (0.146284)
	spl (0.143184)
	ese (0.126502)
	tra (0.123092)
	ecc (0.115035)
	ldo (0.0970026)