Non-Coding RNA Search

Ss1.1-rpliv0117_b11.5

Sequence:


               
               TCGTGTGAATAAGGAACAAAGGAGGCACAGAGAATA------------AAAGGGGAAGGG
GAGTATCAGAGACTTCTAAGTTTGGAGACAGATTTTGAAGACAGAAATCAAAGTACTGGG
TAAGATGCATTTCAGGAAAGAAGAAAAATATGTACAAGTGTAGAGAAGCTTAAAAGAGGG
CACATTTGTTGTTTTGGAGGGAGTACAAGTTGAGTTAAAGAGAGAAGTTTCTGTTAAGGC
TGAAGAATAGGGAAGATACACGTAGCGATGCTCTGTGTTGCATGATAAGAAGAGTCGGAG
TTATTAAAGAGTATGAGATAGGGGAGTGAGATAGGCAGGCAGGTCCTTAGAAAGTTCTGT
TTGGACATGGGATGTCGGAGGGGTTGAAAGAGAACCATATATTGACAAGGAGAGCATTTT
GAAGTAGTTGTGATGAAAGATAAAATGGACTTTATAGTGAGAATGGCTGGGAAAGGATAG
ATTTTATACAAATCTCCAATGAATTACAGAAGAATGCTACCTGTCTTTGGGGAAGAAACA
GGGTTATCCGATGGCATCCTGTTGCGTTTGAGTTCGTGACATCATGAGGGAAAGGCTTGG
CAGCGTTTACTCGGTACTGTGTGGTAACTTATATGGAAAAAAATATGAGAAGGAATGAGT
GTGTGTATAACTAATTTACTTAGCTGTATGCCTGAAATTAATACAATTTTATAAGTCAAC
TCTACTCCAATAAAACAAACAAATAAATAAATAATTTTAACTACCTGAACAAAAAAAAAA
GAATGGACTGGAGACAAGTCAAAAGTATGGATGATGACTACGTTATGCTTGCACTGCTGG
GGAAAAGCACACATAGGGAGGGAACGTTTTATTATGACCCAGTCCCTAACCTATGACCTC
TGTTATCAGTTTTCTCAGGAGGAGAGAATTCTGTCCATCAAATTCAATACCGGGAGATGA
ATTCTTGCCTGAAAGCAGATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTGTGAATAAGGAACAAAGGAGGCACAGAGAATA------------AAAGGGGAAGGG
GAGTATCAGAGACTTCTAAGTTTGGAGACAGATTTTGAAGACAGAAATCAAAGTACTGGG
TAAGATGCATTTCAGGAAAGAAGAAAAATATGTACAAGTGTAGAGAAGCTTAAAAGAGGG
CACATTTGTTGTTTTGGAGGGAGTACAAGTTGAGTTAAAGAGAGAAGTTTCTGTTAAGGC
TGAAGAATAGGGAAGATACACGTAGCGATGCTCTGTGTTGCATGATAAGAAGAGTCGGAG
TTATTAAAGAGTATGAGATAGGGGAGTGAGATAGGCAGGCAGGTCCTTAGAAAGTTCTGT
TTGGACATGGGATGTCGGAGGGGTTGAAAGAGAACCATATATTGACAAGGAGAGCATTTT
GAAGTAGTTGTGATGAAAGATAAAATGGACTTTATAGTGAGAATGGCTGGGAAAGGATAG
ATTTTATACAAATCTCCAATGAATTACAGAAGAATGCTACCTGTCTTTGGGGAAGAAACA
GGGTTATCCGATGGCATCCTGTTGCGTTTGAGTTCGTGACATCATGAGGGAAAGGCTTGG
CAGCGTTTACTCGGTACTGTGTGGTAACTTATATGGAAAAAAATATGAGAAGGAATGAGT
GTGTGTATAACTAATTTACTTAGCTGTATGCCTGAAATTAATACAATTTTATAAGTCAAC
TCTACTCCAATAAAACAAACAAATAAATAAATAATTTTAACTACCTGAACAAAAAAAAAA
GAATGGACTGGAGACAAGTCAAAAGTATGGATGATGACTACGTTATGCTTGCACTGCTGG
GGAAAAGCACACATAGGGAGGGAACGTTTTATTATGACCCAGTCCCTAACCTATGACCTC
TGTTATCAGTTTTCTCAGGAGGAGAGAATTCTGTCCATCAAATTCAATACCGGGAGATGA
ATTCTTGCCTGAAAGCAGATGAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               6-532, gnl|bosTau2|chr1 (31575743-31575200)
               

               
               6-532, gnl|Hg17|chr12 (7525900-7525332)
               

               
               6-532, gnl|Mm7|chr6 (124309551-124310035)
               


               
               596-747, gnl|bosTau2|chr28 (21263230-21263381)
               


               
               768-970, gnl|bosTau2|chr1 (31575112-31574908)
               

               
               768-970, gnl|Hg17|chr12 (7525247-7525047)
               

               
               768-970, gnl|Mm7|chr6 (124310089-124310264)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-532, gnl|bosTau2|chr1 (31575743-31575200)
               

               
               6-532, gnl|Hg17|chr12 (7525900-7525332)
               

               
               6-532, gnl|Mm7|chr6 (124309551-124310035)
               


               
               596-747, gnl|bosTau2|chr28 (21263230-21263381)
               


               
               768-970, gnl|bosTau2|chr1 (31575112-31574908)
               

               
               768-970, gnl|Hg17|chr12 (7525247-7525047)
               

               
               768-970, gnl|Mm7|chr6 (124310089-124310264)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	6-532, gnl\|bosTau2\|chr1 (31575743-31575200)
	6-532, gnl\|Hg17\|chr12 (7525900-7525332)
	6-532, gnl\|Mm7\|chr6 (124309551-124310035)

	596-747, gnl\|bosTau2\|chr28 (21263230-21263381)

	768-970, gnl\|bosTau2\|chr1 (31575112-31574908)
	768-970, gnl\|Hg17\|chr12 (7525247-7525047)
	768-970, gnl\|Mm7\|chr6 (124310089-124310264)

	liv (0.292569)
	gul (0.177588)
	spl (0.143184)
	lnt (0.142308)
	thg (0.126791)
	bla (0.124347)