Non-Coding RNA Search

Ss1.1-rpliv0117_j1.5

Sequence:


               
               GGTCATTTTAAAATCCATACATTGATTTTATAAAAGTATTTTTTACATGTCATTATCAGG
AGCTCACTGTGAATGTGTTATATTCAAATGGCTGTTTAACCACACAGTACACTACATTTT
ACATATAACATGCACTTAATCTCTGGGAATAGTAAATTACATTATAAATCATACATCGGT
CAACAGACTCCAAGCAGAGAGGAAAGAAGAGTAACAGCATTGTTGTCTGTGTGCCACACA
CCGTACAGAACTTCGTGCTCTTGGTCACATGTATCCAAGGTTTTGTTGTATTTCTAAGAA
TTCCCATTTCAGTGTTGAGTTTACCTTTATTTCAGGAAGTACTTGGCTTCTCACTTTCTT
GATTTGGTTTTGCTTCCACTTTGATAATCAAGAAGGGAAAATAATGAGAATGTTCATACA
TGAAAATTGTTAATCTACTGAAGACTAATTTCTGTCTGTTCTGAACATTTAATCATGTTT
TTAAAAGTTAAAAAAAAATCAAAAGAAAAACAAGGAATATGATGAATGTTTGGCTTATGT
GAACACTTAGAGATAAATTTTTTAAGACTAGTTATTCACAAAATAAAGTTTTCTCTTCAT
GTTAGAAAAATTTTTTTAGAAATCCCGGGGATTGTACCCAACTCTAGCTAGCCAGTTTTA
AAACTTGTATCCTTTTGAGAACTATATTGATAGAAAAATACTTTTTATAAGCAGTAAAAT
AAGAATGTTCCAGTGACTACCTGTTCTGATAACTAGTCTTGTTAAAACTTTCTTTTGCAG
GGCATTTTCTTTCATGTTTGGTTTACAGCAGTGTAGAGCGGGCAAGTTAATAAAAAAGTT
TGAGCTTGGGATACTGAAAAAAAGATCAAAGAAAGAAAAATGGTGACTTCTTTGTTTTGG
GGTAAACTGGGACCCCAGTAATTTTTTCCTCATGTGTATGGTGCTCCTTATGATTCGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCATTTTAAAATCCATACATTGATTTTATAAAAGTATTTTTTACATGTCATTATCAGG
AGCTCACTGTGAATGTGTTATATTCAAATGGCTGTTTAACCACACAGTACACTACATTTT
ACATATAACATGCACTTAATCTCTGGGAATAGTAAATTACATTATAAATCATACATCGGT
CAACAGACTCCAAGCAGAGAGGAAAGAAGAGTAACAGCATTGTTGTCTGTGTGCCACACA
CCGTACAGAACTTCGTGCTCTTGGTCACATGTATCCAAGGTTTTGTTGTATTTCTAAGAA
TTCCCATTTCAGTGTTGAGTTTACCTTTATTTCAGGAAGTACTTGGCTTCTCACTTTCTT
GATTTGGTTTTGCTTCCACTTTGATAATCAAGAAGGGAAAATAATGAGAATGTTCATACA
TGAAAATTGTTAATCTACTGAAGACTAATTTCTGTCTGTTCTGAACATTTAATCATGTTT
TTAAAAGTTAAAAAAAAATCAAAAGAAAAACAAGGAATATGATGAATGTTTGGCTTATGT
GAACACTTAGAGATAAATTTTTTAAGACTAGTTATTCACAAAATAAAGTTTTCTCTTCAT
GTTAGAAAAATTTTTTTAGAAATCCCGGGGATTGTACCCAACTCTAGCTAGCCAGTTTTA
AAACTTGTATCCTTTTGAGAACTATATTGATAGAAAAATACTTTTTATAAGCAGTAAAAT
AAGAATGTTCCAGTGACTACCTGTTCTGATAACTAGTCTTGTTAAAACTTTCTTTTGCAG
GGCATTTTCTTTCATGTTTGGTTTACAGCAGTGTAGAGCGGGCAAGTTAATAAAAAAGTT
TGAGCTTGGGATACTGAAAAAAAGATCAAAGAAAGAAAAATGGTGACTTCTTTGTTTTGG
GGTAAACTGGGACCCCAGTAATTTTTTCCTCATGTGTATGGTGCTCCTTATGATTCGTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr2 (31793575-31792618)
               

               
               1-960, gnl|Hg17|chr2 (148520194-148521140)
               

               
               1-960, gnl|Mm7|chr2 (48908680-48909567)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr2 (31793575-31792618)
               

               
               1-960, gnl|Hg17|chr2 (148520194-148521140)
               

               
               1-960, gnl|Mm7|chr2 (48908680-48909567)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	1-960, gnl\|bosTau2\|chr2 (31793575-31792618)
	1-960, gnl\|Hg17\|chr2 (148520194-148521140)
	1-960, gnl\|Mm7\|chr2 (48908680-48909567)

	gul (0.355177)
	mgp (0.230681)
	liv (0.146284)
	pla (0.133672)
	kid (0.129735)
	ecc (0.115035)