Non-Coding RNA Search

Ss1.1-rpliv0117_l13.5

Sequence:


               
               ATGAAACTGAAAAAGCAAAGTTACAAAAATGCAATCAACTGTATGGGTCTTGGGGATATC
TGCCTTATAGGATATAGTCAAAGAAATGAACAAAATATCCCATAAAATATCTTTGAATGA
AATGTTTATTAGGCCAAAGGCAAACAAACGTTAATTCATTTACGCCTTGGAAAAGTAAAC
ACATACTTCGGAAAATCTGTAATCTCATTTTTATCAGGCTAAAAGAGTAATTAAAAAGTT
TTATTATACTCACGCTGCATCTACATGACATGGACATAAAATTGAAAGGAGAAAAATCCA
GGCACATAACTAGAGATATTTTTGAGGGGCTTTTACGATTACCACATAACCAGCTTGGCT
GATTTTCTATCATTGAAATGACTAGTTGTGATTCAGTTGATTAAACTCCACGTCTGTTTT
GGTGTCTTATACACAAACCTACAAAGACAAGCAGAACTTGCAATATTCTTGCAGAAATTT
CTGTGCGTTAAAATTGAGGGCAATAAGCTTGCTTATTCATTTTATTATACCATTAAATAA
ATATTTACAATTCACCCAGATAGACCACACTTTCTTTGTGATTATATAAAAGAGTAGTTG
ATTAATTTGCAGACTAAAGGTAGGACAGGTACATTTTTTGATAAATAGCACATTTACAGG
AAGCTTAAAGGAAACTGACTTAAAATGAGGATTCTAATTGGGGAGGGAACCATGAGATAA
CAGCTTGACGTTTCATTGTTTTTCTCATTTAAACATCAGATTCACTGAATGTACACGTCA
ATACTTATTTGGAGAATAGTTCTCCTAAAATTTGAAACTTCACATGATGTTGGCATAGCA
AGATGTTTCTGCTTCCAGCCTTCAGGAATTAAGATCTGATCAGAATTTACCTCGAAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAACTGAAAAAGCAAAGTTACAAAAATGCAATCAACTGTATGGGTCTTGGGGATATC
TGCCTTATAGGATATAGTCAAAGAAATGAACAAAATATCCCATAAAATATCTTTGAATGA
AATGTTTATTAGGCCAAAGGCAAACAAACGTTAATTCATTTACGCCTTGGAAAAGTAAAC
ACATACTTCGGAAAATCTGTAATCTCATTTTTATCAGGCTAAAAGAGTAATTAAAAAGTT
TTATTATACTCACGCTGCATCTACATGACATGGACATAAAATTGAAAGGAGAAAAATCCA
GGCACATAACTAGAGATATTTTTGAGGGGCTTTTACGATTACCACATAACCAGCTTGGCT
GATTTTCTATCATTGAAATGACTAGTTGTGATTCAGTTGATTAAACTCCACGTCTGTTTT
GGTGTCTTATACACAAACCTACAAAGACAAGCAGAACTTGCAATATTCTTGCAGAAATTT
CTGTGCGTTAAAATTGAGGGCAATAAGCTTGCTTATTCATTTTATTATACCATTAAATAA
ATATTTACAATTCACCCAGATAGACCACACTTTCTTTGTGATTATATAAAAGAGTAGTTG
ATTAATTTGCAGACTAAAGGTAGGACAGGTACATTTTTTGATAAATAGCACATTTACAGG
AAGCTTAAAGGAAACTGACTTAAAATGAGGATTCTAATTGGGGAGGGAACCATGAGATAA
CAGCTTGACGTTTCATTGTTTTTCTCATTTAAACATCAGATTCACTGAATGTACACGTCA
ATACTTATTTGGAGAATAGTTCTCCTAAAATTTGAAACTTCACATGATGTTGGCATAGCA
AGATGTTTCTGCTTCCAGCCTTCAGGAATTAAGATCTGATCAGAATTTACCTCGAAGGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr13 (10982562-10981668)
               

               
               1-900, gnl|Hg17|chr10 (21113132-21112291)
               

               
               1-900, gnl|Mm7|chr2 (17412356-17411467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr13 (10982562-10981668)
               

               
               1-900, gnl|Hg17|chr10 (21113132-21112291)
               

               
               1-900, gnl|Mm7|chr2 (17412356-17411467)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               hlv (0.139256)

	1-900, gnl\|bosTau2\|chr13 (10982562-10981668)
	1-900, gnl\|Hg17\|chr10 (21113132-21112291)
	1-900, gnl\|Mm7\|chr2 (17412356-17411467)