Non-Coding RNA Search

Ss1.1-rpliv0117_m2.5

Sequence:


               
               TAGTGGATTACATCAGTTAAAAATGAATTGTTCAAGAGTCTTTAACCTATTCTGCTTATA
TGGAAATATTGAAAAGGTAAAATTTATGAAGACCATTCCTGGTACAGCACTAGTAGAAAT
GGGTGATGAGTATGCTGTAGAAAGAGCTGTCACACATCTTAACAATGTGAAATTATTTGG
GAAAAGACTTAATGTTTGTGTTTCTAAACAACATTCAGTTGTTCCAAGTCAAATATTCGA
GCTCGAGGATGGTACAAGTAGCTACAAGGATTTTGCAATGAGCAAAAATAATCGCTTTAC
AAGTGCTGGCCAAGCATCTAAGAATATAATCCAGCCACCCTCGTGTGTGCTGCATTATTA
TAACGTTCCGTTGTGTGTCACAGAAGAAACCTTCACAAAGTTGTGTAATGACCATGAAGT
TCTTACATTCATCAAATATAAAGTGTTTGATGCAAAACCTTCTGCCAAAACACTTTCTGG
GCTGTTAGAATGGGAATGCAAAACTGATGCAGTAGAAGCCCTTACAGCACTAAATCACTA
CCAGATAAGAGTTCCCAATGGTTCCAATCCCTACACACTGAAGCTTTGCTTTTCTACATC
ATCCCATTTATAAGAAGAGAAGAGCATGTTAGAATTTGTTTACCTTTATTACAATTTTAA
AGCTACACTTCATTTAAAAAAAAAAAACTAAAATGGTTGATCTAATGTTGCCTTGCTTAT
TTTAAGATCCCGTTCTGTAATAAACAAATATTTTGCCTTGAGTAAATTTGTTGTAAACTT
AAATATTGAATTGTTTTCGTTTTAAAATAGAATATCATAATGTAGACTATCTACAGCTTT
CTTGTAGATTACACAGATATATGATTTCTAATCTTATTTTTCTTCCACAGTGAAAATATA
TTTGCATTCTTAATGCTAATTATCTGCAAGTATTTTTCCATTGTGTATGAGATTAATGCA
GGTGAAAGTATTGCATTTTAATATTATAGAATTCCTATTATATGTTTAGATGTTTATGTT
GCAGTTATTCATATTAAACGTAACTTGTATTTATTAAGTATTTTAATCAAGTTTGAGAAT
AACATTGCATATATTAAATTTTAAGTACTACAGATTTAGCTGATTTTATATTTCTGAAAG
GCTAACAGACATATGGATACACTTGTACAGTATACACTCAAACTTATTTAAATTTGGTGT
ATTTTTGTTTGTTTGTTTTTTTAGTAAGTCATTGTTCATTTGTAGTGACATGCCTCTGTT
TCTAGTTCCAGTTTGGAGATTTTATAAAATTACAACAATGAGTTAATGTGTTCATCTTCA
TTTGTTGCATGTTACTAGATCTTGAAAACATGTCTGGTATTGAAATTTTAACAGAAGTTA
TGATTAACAGTTCCTCTTCTAGATAATCTGAGATCCATGAATGGGCTTTAGGGAGTCTGT
GAACTCTCTAAAATTGTATGTAAAATTTTGGGTACTTGCGTTTTTATTTTTTACTCTTGA
ATCCATCAGTAATATATGTATTTTTCTACATGGTACAAGGTATAAGGATCTAATTTTATT
TTTATTCCAAACTGATAGCTATTTGTTTCAATACCATTTATTAAACATTCTTTCTCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTGGATTACATCAGTTAAAAATGAATTGTTCAAGAGTCTTTAACCTATTCTGCTTATA
TGGAAATATTGAAAAGGTAAAATTTATGAAGACCATTCCTGGTACAGCACTAGTAGAAAT
GGGTGATGAGTATGCTGTAGAAAGAGCTGTCACACATCTTAACAATGTGAAATTATTTGG
GAAAAGACTTAATGTTTGTGTTTCTAAACAACATTCAGTTGTTCCAAGTCAAATATTCGA
GCTCGAGGATGGTACAAGTAGCTACAAGGATTTTGCAATGAGCAAAAATAATCGCTTTAC
AAGTGCTGGCCAAGCATCTAAGAATATAATCCAGCCACCCTCGTGTGTGCTGCATTATTA
TAACGTTCCGTTGTGTGTCACAGAAGAAACCTTCACAAAGTTGTGTAATGACCATGAAGT
TCTTACATTCATCAAATATAAAGTGTTTGATGCAAAACCTTCTGCCAAAACACTTTCTGG
GCTGTTAGAATGGGAATGCAAAACTGATGCAGTAGAAGCCCTTACAGCACTAAATCACTA
CCAGATAAGAGTTCCCAATGGTTCCAATCCCTACACACTGAAGCTTTGCTTTTCTACATC
ATCCCATTTATAAGAAGAGAAGAGCATGTTAGAATTTGTTTACCTTTATTACAATTTTAA
AGCTACACTTCATTTAAAAAAAAAAAACTAAAATGGTTGATCTAATGTTGCCTTGCTTAT
TTTAAGATCCCGTTCTGTAATAAACAAATATTTTGCCTTGAGTAAATTTGTTGTAAACTT
AAATATTGAATTGTTTTCGTTTTAAAATAGAATATCATAATGTAGACTATCTACAGCTTT
CTTGTAGATTACACAGATATATGATTTCTAATCTTATTTTTCTTCCACAGTGAAAATATA
TTTGCATTCTTAATGCTAATTATCTGCAAGTATTTTTCCATTGTGTATGAGATTAATGCA
GGTGAAAGTATTGCATTTTAATATTATAGAATTCCTATTATATGTTTAGATGTTTATGTT
GCAGTTATTCATATTAAACGTAACTTGTATTTATTAAGTATTTTAATCAAGTTTGAGAAT
AACATTGCATATATTAAATTTTAAGTACTACAGATTTAGCTGATTTTATATTTCTGAAAG
GCTAACAGACATATGGATACACTTGTACAGTATACACTCAAACTTATTTAAATTTGGTGT
ATTTTTGTTTGTTTGTTTTTTTAGTAAGTCATTGTTCATTTGTAGTGACATGCCTCTGTT
TCTAGTTCCAGTTTGGAGATTTTATAAAATTACAACAATGAGTTAATGTGTTCATCTTCA
TTTGTTGCATGTTACTAGATCTTGAAAACATGTCTGGTATTGAAATTTTAACAGAAGTTA
TGATTAACAGTTCCTCTTCTAGATAATCTGAGATCCATGAATGGGCTTTAGGGAGTCTGT
GAACTCTCTAAAATTGTATGTAAAATTTTGGGTACTTGCGTTTTTATTTTTTACTCTTGA
ATCCATCAGTAATATATGTATTTTTCTACATGGTACAAGGTATAAGGATCTAATTTTATT
TTTATTCCAAACTGATAGCTATTTGTTTCAATACCATTTATTAAACATTCTTTCTCCCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13905044|gb|AAH06805.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13905044|gb|AAH06805.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               228-347, - strand, RNAz p=0.842108
               

               
               873-983, - strand, RNAz p=0.959705
               

               
               1404-1518, - strand, RNAz p=0.738062

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-347, - strand, RNAz p=0.842108
               

               
               873-983, - strand, RNAz p=0.959705
               

               
               1404-1518, - strand, RNAz p=0.738062

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               190-411, gnl|bosTau2|chr11 (16189995-16190217)
               

               
               190-411, gnl|Hg17|chr2 (38708137-38707915)
               

               
               190-411, gnl|Mm7|chr17 (78329970-78329748)
               


               
               558-1620, gnl|bosTau2|chr11 (16193623-16194659)
               

               
               558-1620, gnl|Hg17|chr2 (38703030-38701981)
               

               
               558-1620, gnl|Mm7|chr17 (78326253-78325228)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-411, gnl|bosTau2|chr11 (16189995-16190217)
               

               
               190-411, gnl|Hg17|chr2 (38708137-38707915)
               

               
               190-411, gnl|Mm7|chr17 (78329970-78329748)
               


               
               558-1620, gnl|bosTau2|chr11 (16193623-16194659)
               

               
               558-1620, gnl|Hg17|chr2 (38703030-38701981)
               

               
               558-1620, gnl|Mm7|chr17 (78326253-78325228)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               bfe (0.449573)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	228-347, - strand, RNAz p=0.842108
	873-983, - strand, RNAz p=0.959705
	1404-1518, - strand, RNAz p=0.738062

	190-411, gnl\|bosTau2\|chr11 (16189995-16190217)
	190-411, gnl\|Hg17\|chr2 (38708137-38707915)
	190-411, gnl\|Mm7\|chr17 (78329970-78329748)

	558-1620, gnl\|bosTau2\|chr11 (16193623-16194659)
	558-1620, gnl\|Hg17\|chr2 (38703030-38701981)
	558-1620, gnl\|Mm7\|chr17 (78326253-78325228)

	bfe (0.449573)
	eye (0.341006)
	liv (0.292569)
	fce (0.271592)
	kid (0.259471)
	mgp (0.230681)
	hea (0.204499)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	fco (0.157208)
	isp (0.150376)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)