Non-Coding RNA Search

Ss1.1-rpliv0118_i2.5

Sequence:


               
               TCTTTTGCCCATTACAAAAAAACAAAAACAGACAAAACAGGTTTTTTGGGTTTTGATTTG
TGGGAGTTATTTATATATTCTGATACTAACCCTTCATTAGATAAGTGGTTTACAAAAATT
GTTTCCATTTCAGAGTTGCCTTTTCACTGTTGATTGTGTCTTTTGATGCTTTTAATTTCG
ATGTAATTCAGTTTATCTGTTTTTACTTTTGTTACCTGTGCTTTTGGTGTCATGTCCAAA
AAAATGTTGCCAAATCCAATGTTATGAAGTATTTATTGCTGCTCTTAGAAGTTCTTTAGC
AGTCAGTCTTATTTCTGTAATTACTGTCTAGTCTATTTTGCCACTTGGTTTATCAGCTGC
ATTTTTCTGCTTTGACCATTTACTTACATTGTAAAACAACCATGTTGATTTTTATAAAGA
TCATGAATTCTTTGTAGAGTTGGGAAGGGAAGCTTTTGCTGGTGATTGTCAAACTTACTC
TCATTTTTTCTTATCTTTGTTGTGTACAAAGCTATCTCTTATACAAAGACTATTAAAAAT
TTGATGTGATAAGTCTGATAATATCTAATGAGACTATTGGGTTTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTGCCCATTACAAAAAAACAAAAACAGACAAAACAGGTTTTTTGGGTTTTGATTTG
TGGGAGTTATTTATATATTCTGATACTAACCCTTCATTAGATAAGTGGTTTACAAAAATT
GTTTCCATTTCAGAGTTGCCTTTTCACTGTTGATTGTGTCTTTTGATGCTTTTAATTTCG
ATGTAATTCAGTTTATCTGTTTTTACTTTTGTTACCTGTGCTTTTGGTGTCATGTCCAAA
AAAATGTTGCCAAATCCAATGTTATGAAGTATTTATTGCTGCTCTTAGAAGTTCTTTAGC
AGTCAGTCTTATTTCTGTAATTACTGTCTAGTCTATTTTGCCACTTGGTTTATCAGCTGC
ATTTTTCTGCTTTGACCATTTACTTACATTGTAAAACAACCATGTTGATTTTTATAAAGA
TCATGAATTCTTTGTAGAGTTGGGAAGGGAAGCTTTTGCTGGTGATTGTCAAACTTACTC
TCATTTTTTCTTATCTTTGTTGTGTACAAAGCTATCTCTTATACAAAGACTATTAAAAAT
TTGATGTGATAAGTCTGATAATATCTAATGAGACTATTGGGTTTGCTC

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               43-587, gnl|bosTau2|chr29 (38485264-38484710)
               

               
               43-587, gnl|Hg17|chr11 (64955807-64956528)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-587, gnl|bosTau2|chr29 (38485264-38484710)
               

               
               43-587, gnl|Hg17|chr11 (64955807-64956528)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

	43-587, gnl\|bosTau2\|chr29 (38485264-38484710)
	43-587, gnl\|Hg17\|chr11 (64955807-64956528)