Non-Coding RNA Search

Ss1.1-rpliv0123_e17.5

Sequence:


               
               TAACTGTTACACAAATAACAGTGGCACTGAGCAGCTTAAAAAACATTTTCACTCCTCTGC
TTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGTCTCTTTTCTACAA
GCCTTTTTGGGCTTTTCTATCACCAGTATCTGACTGTAGCATGAATCTCAGTTAACAAAA
AAGAATATTGAAGTCACACTTTGAGTTCAAATAGTCATGCCCTTGAAGGGCTGATGAAAA
CCAGAAGACAGCAAATACAAAGGAAAAACATATCAGAATATCTTGTTTTAAATACTTCCT
CTGTATTCTCAGGGTGAATTAATGGTATTAATATTTAAAATTATAGAATAGATTGTTAAA
GGCTATACTGTGGCATTGGAATTTTAACTTCTTGTATTAATGGATGTGAGAGGGCTATCT
ACAAGAGTAATACTTCTGATTACCTTGGTTTACAGAAACCTCCAGCAGTCTTTGAAACTT
CTCATATGGCACCAGTTTTTGTGATTGCTCCTAATGGTATTGAGGAAGGTACTGTTTATA
TTTGTAGTGGCTGCCTATAGAACAATCTTCAAACTGAGCCATGCTTTAGGAGAGAGAAAG
GAGCTAAAGTCACTTCTGTTGGTAATATACCAGTCACTCTTCAACAGCAACAAAAAAATC
CAACAGAAGGAAAGAAATAGCTACTGTATATTACAGTAAAGAAAGCTGCATAGTAATTTT
AAATTTAATGGAGATATACATGCTTAATATCTATAAGTACTGCTGCTTGAGAGTAGCAAG
ACTATTGTTTTAAAAAGTATTCTATCCAACTGAGGGATCTTTTAAAATGGTTGGCTATAT
GAACATTTGTAGTCTTGCCATTACATTTGGACCTCCCTTATTTTATTTTATTCTCTGATC
CTAAGTACAGTTCTCTTTAATAGTCTAAAGATATTTATCAACATTGATCAGACTTTTAAA
AAATTACTTTGTAATCCTGCTGACTACTTGTATGTATTATATATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACTGTTACACAAATAACAGTGGCACTGAGCAGCTTAAAAAACATTTTCACTCCTCTGC
TTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGTCTCTTTTCTACAA
GCCTTTTTGGGCTTTTCTATCACCAGTATCTGACTGTAGCATGAATCTCAGTTAACAAAA
AAGAATATTGAAGTCACACTTTGAGTTCAAATAGTCATGCCCTTGAAGGGCTGATGAAAA
CCAGAAGACAGCAAATACAAAGGAAAAACATATCAGAATATCTTGTTTTAAATACTTCCT
CTGTATTCTCAGGGTGAATTAATGGTATTAATATTTAAAATTATAGAATAGATTGTTAAA
GGCTATACTGTGGCATTGGAATTTTAACTTCTTGTATTAATGGATGTGAGAGGGCTATCT
ACAAGAGTAATACTTCTGATTACCTTGGTTTACAGAAACCTCCAGCAGTCTTTGAAACTT
CTCATATGGCACCAGTTTTTGTGATTGCTCCTAATGGTATTGAGGAAGGTACTGTTTATA
TTTGTAGTGGCTGCCTATAGAACAATCTTCAAACTGAGCCATGCTTTAGGAGAGAGAAAG
GAGCTAAAGTCACTTCTGTTGGTAATATACCAGTCACTCTTCAACAGCAACAAAAAAATC
CAACAGAAGGAAAGAAATAGCTACTGTATATTACAGTAAAGAAAGCTGCATAGTAATTTT
AAATTTAATGGAGATATACATGCTTAATATCTATAAGTACTGCTGCTTGAGAGTAGCAAG
ACTATTGTTTTAAAAAGTATTCTATCCAACTGAGGGATCTTTTAAAATGGTTGGCTATAT
GAACATTTGTAGTCTTGCCATTACATTTGGACCTCCCTTATTTTATTTTATTCTCTGATC
CTAAGTACAGTTCTCTTTAATAGTCTAAAGATATTTATCAACATTGATCAGACTTTTAAA
AAATTACTTTGTAATCCTGCTGACTACTTGTATGTATTATATATATAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-313, - strand, RNAz p=0.971458
               

               
               585-783, + strand, RNAz p=0.999731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-313, - strand, RNAz p=0.971458
               

               
               585-783, + strand, RNAz p=0.999731

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               674-781, CH3#013_C07T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747500.1|), blast E-value=2.99878e-43, identity=96.3% 
               

               
               596-781, CH3#018_H02T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU748253.1|), blast E-value=0, identity=88.77% 
               

               
               596-781, CH3#060_B01T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409349.1|), blast E-value=0, identity=88.77% 
               

               
               596-781, CH3#060_B01T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409350.1|), blast E-value=0, identity=88.77% 
               

               
               659-776, 1260302 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519455.1|), 
blast E-value=4.99983e-42, identity=94.07% 
               

               
               659-776, 1431288 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR116226.1|), 
blast E-value=4.99983e-42, identity=94.07%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               674-781, CH3#013_C07T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747500.1|), blast E-value=2.99878e-43, identity=96.3% 
               

               
               596-781, CH3#018_H02T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU748253.1|), blast E-value=0, identity=88.77% 
               

               
               596-781, CH3#060_B01T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409349.1|), blast E-value=0, identity=88.77% 
               

               
               596-781, CH3#060_B01T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409350.1|), blast E-value=0, identity=88.77% 
               

               
               659-776, 1260302 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519455.1|), 
blast E-value=4.99983e-42, identity=94.07% 
               

               
               659-776, 1431288 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DR116226.1|), 
blast E-value=4.99983e-42, identity=94.07%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648757, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648757, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr7 (57173780-57174786)
               

               
               1-1008, gnl|Hg17|chr5 (87527947-87526952)
               

               
               1-1008, gnl|Mm7|chr13 (81364475-81365457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr7 (57173780-57174786)
               

               
               1-1008, gnl|Hg17|chr5 (87527947-87526952)
               

               
               1-1008, gnl|Mm7|chr13 (81364475-81365457)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-313, - strand, RNAz p=0.971458
	585-783, + strand, RNAz p=0.999731

	674-781, CH3#013_C07T3 Canine heart normalized cDNA Library in pBluescript (gb\|BU747500.1\|), blast E-value=2.99878e-43, identity=96.3%
	596-781, CH3#018_H02T7 Canine heart normalized cDNA Library in pBluescript (gb\|BU748253.1\|), blast E-value=0, identity=88.77%
	596-781, CH3#060_B01T3 Canine heart normalized cDNA Library in pBluescript (gb\|CF409349.1\|), blast E-value=0, identity=88.77%
	596-781, CH3#060_B01T7 Canine heart normalized cDNA Library in pBluescript (gb\|CF409350.1\|), blast E-value=0, identity=88.77%
	659-776, 1260302 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN519455.1\|), blast E-value=4.99983e-42, identity=94.07%
	659-776, 1431288 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DR116226.1\|), blast E-value=4.99983e-42, identity=94.07%

	1-1008, gnl\|bosTau2\|chr7 (57173780-57174786)
	1-1008, gnl\|Hg17\|chr5 (87527947-87526952)
	1-1008, gnl\|Mm7\|chr13 (81364475-81365457)

	tra (0.246184)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)