Non-Coding RNA Search

Ss1.1-rpliv0127_m5.5

Sequence:


               
               AGCCTCGCTGGGTGATGAGGACAACCATGGTAACAGAGCCATTTGGAGAGCCACCGAGCT
GGTGCCATCCACCCGGCAGAGACTTCCCCACGCCTACACCTGTTTCCCACCCATCACAGC
GTCAGAGGTGTTGGGCTAATTCCATTTACTCCAGCAGCCATAAAATGAATCATGTTTCTC
TCTTGATTTTTGCCCAGAAGAGGCAGTTATGATTCCATGTTTCTTCTTTAAGTGTTTTTA
ATTGGGCTCAATTAAGGATCACAATCCATATTTTGAAGACAATATTTCTTCACGTTGCAG
ACACAATCTGTTCTACATTAGGAGGTTGAGAAAGGCGGAGAAAGCCAAACCAAATGGATT
CTTTTAGCTTTAGGATCTTGTCTGCTTATGATATTGACAGAGCTGCAATTTATGAGAATA
CATTTTCACAATTCTGTTTCTTCCTATGAAAACTATATTTAGCGGGCAACAACTATTTTT
GTGATGGGATGGGGGAATATATCCATGTATAAAACCTGTAACATTGGACAGCTTGGTTCA
AGAGGGGAGGGGTATTTTTAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTCGCTGGGTGATGAGGACAACCATGGTAACAGAGCCATTTGGAGAGCCACCGAGCT
GGTGCCATCCACCCGGCAGAGACTTCCCCACGCCTACACCTGTTTCCCACCCATCACAGC
GTCAGAGGTGTTGGGCTAATTCCATTTACTCCAGCAGCCATAAAATGAATCATGTTTCTC
TCTTGATTTTTGCCCAGAAGAGGCAGTTATGATTCCATGTTTCTTCTTTAAGTGTTTTTA
ATTGGGCTCAATTAAGGATCACAATCCATATTTTGAAGACAATATTTCTTCACGTTGCAG
ACACAATCTGTTCTACATTAGGAGGTTGAGAAAGGCGGAGAAAGCCAAACCAAATGGATT
CTTTTAGCTTTAGGATCTTGTCTGCTTATGATATTGACAGAGCTGCAATTTATGAGAATA
CATTTTCACAATTCTGTTTCTTCCTATGAAAACTATATTTAGCGGGCAACAACTATTTTT
GTGATGGGATGGGGGAATATATCCATGTATAAAACCTGTAACATTGGACAGCTTGGTTCA
AGAGGGGAGGGGTATTTTTAGAGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-562, gnl|bosTau2|chr8 (53498693-53498131)
               

               
               1-562, gnl|Hg17|chr9 (110010662-110011240)
               

               
               1-562, gnl|Mm7|chr4 (57934719-57935334)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-562, gnl|bosTau2|chr8 (53498693-53498131)
               

               
               1-562, gnl|Hg17|chr9 (110010662-110011240)
               

               
               1-562, gnl|Mm7|chr4 (57934719-57935334)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.169924)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               med (0.116252)

	1-562, gnl\|bosTau2\|chr8 (53498693-53498131)
	1-562, gnl\|Hg17\|chr9 (110010662-110011240)
	1-562, gnl\|Mm7\|chr4 (57934719-57935334)