Non-Coding RNA Search

Ss1.1-rpliv0128_o24.5

Sequence:


               
               ATGGGGGCAACAAAACAACACTGTAAACACATCAAAGGTTTGTTCTGACCGAGGTGAGAA
TTCTTAAACCCTGTTGGATTAAGCCTTACAAGACTACTGTGTGTTGTAACCCAAGCTGTG
CAATTTATGAAGCCAAGAGTGAACGGACCTTTCATTTATATCTTCATCCAAATGAAATTC
CCTGCACATTTTTTAAATTTAAAAAAGGCTATTTAAAAATACAGTCCATTCACAGATATG
AACTCCTTTCTGTTAGATGATGTGTTAATTTCCCTACTTTTTTTTTTTTAAGGAAGTATA
TTTCTATTAGTATTTTTCCAGTGAAAAGAAGACTTGTTTAAATTTCACATTTATTAAAAT
AATACCTGCTATAGGAAAACCAAATACTACAAGTGGTCAATTAGATTTTAAGTTCTGTAA
TAGTCTTTTATTACCCACAAGGTTGAAATGTTATGTTGAATGCAAAAAGATAAAAACAAA
AGTGATGAGGTAGGAATGGCAAGTAAATAAAGCATTTTTGATCTTGTAACCATAATCATT
ACAATGGAAGGAATTCACAAACTACTGCCAGAGGGAAATATTTTTAATTAGAGCTTAAAA
AAGGAAGGGGGAAAAAAACACCTCCATTTGTTTAAAAGAAAAGCCTGTAATTTGTTTCTT
CCAAGATTATCTCTTAAATTTGGAAAGCGAAACATCCTAAACAGTTTTATTTATAGTTTT
GAATTGTCAATTTGTACTTTGCTACTGATCTGTGATCAACCATTTTAACTTTCATTCATC
TCTAGGGATGTTTAAAAAGAAATACATTTATATGCTTATATAATTGCAAAATAAATCAAC
TATAAGAAGCTAAGAGAACTGGTACTTTAATTACTTGTGTTTGCAAATAGGTTCCATTTT
CCTTGTTGAATAGATTATAACCTTGTTAACTATGCATAGGCCTAAGAAAGGTGGCACATA
AACTGTGCATGTAAATTTTAAGTGGGTATTTTGTGCAATTCGTTAAGATACTCTATAAAA
ATGATCCTATATATTGAAATCAGAAACCTTACCAAACAAGAAAAACATCAGAAGCTGCTG
CCATGATGACTATTTTCTACTGTAGGCTGCTTTGGAATTAACTCCCATATCCTTGCTTTG
TAAGTTGATACTATCACTATGCATTTCTACACATTTTATAAATTTGATTTATGCAAATTT
TGATACACTGTATGTTTCTGTAGAAATTGTATAAATATTCAAATTTTTATTAGGGGAAAA
TTTTAAAAGTTTATGTATATCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGGGCAACAAAACAACACTGTAAACACATCAAAGGTTTGTTCTGACCGAGGTGAGAA
TTCTTAAACCCTGTTGGATTAAGCCTTACAAGACTACTGTGTGTTGTAACCCAAGCTGTG
CAATTTATGAAGCCAAGAGTGAACGGACCTTTCATTTATATCTTCATCCAAATGAAATTC
CCTGCACATTTTTTAAATTTAAAAAAGGCTATTTAAAAATACAGTCCATTCACAGATATG
AACTCCTTTCTGTTAGATGATGTGTTAATTTCCCTACTTTTTTTTTTTTAAGGAAGTATA
TTTCTATTAGTATTTTTCCAGTGAAAAGAAGACTTGTTTAAATTTCACATTTATTAAAAT
AATACCTGCTATAGGAAAACCAAATACTACAAGTGGTCAATTAGATTTTAAGTTCTGTAA
TAGTCTTTTATTACCCACAAGGTTGAAATGTTATGTTGAATGCAAAAAGATAAAAACAAA
AGTGATGAGGTAGGAATGGCAAGTAAATAAAGCATTTTTGATCTTGTAACCATAATCATT
ACAATGGAAGGAATTCACAAACTACTGCCAGAGGGAAATATTTTTAATTAGAGCTTAAAA
AAGGAAGGGGGAAAAAAACACCTCCATTTGTTTAAAAGAAAAGCCTGTAATTTGTTTCTT
CCAAGATTATCTCTTAAATTTGGAAAGCGAAACATCCTAAACAGTTTTATTTATAGTTTT
GAATTGTCAATTTGTACTTTGCTACTGATCTGTGATCAACCATTTTAACTTTCATTCATC
TCTAGGGATGTTTAAAAAGAAATACATTTATATGCTTATATAATTGCAAAATAAATCAAC
TATAAGAAGCTAAGAGAACTGGTACTTTAATTACTTGTGTTTGCAAATAGGTTCCATTTT
CCTTGTTGAATAGATTATAACCTTGTTAACTATGCATAGGCCTAAGAAAGGTGGCACATA
AACTGTGCATGTAAATTTTAAGTGGGTATTTTGTGCAATTCGTTAAGATACTCTATAAAA
ATGATCCTATATATTGAAATCAGAAACCTTACCAAACAAGAAAAACATCAGAAGCTGCTG
CCATGATGACTATTTTCTACTGTAGGCTGCTTTGGAATTAACTCCCATATCCTTGCTTTG
TAAGTTGATACTATCACTATGCATTTCTACACATTTTATAAATTTGATTTATGCAAATTT
TGATACACTGTATGTTTCTGTAGAAATTGTATAAATATTCAAATTTTTATTAGGGGAAAA
TTTTAAAAGTTTATGTATATCTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-1284, gnl|bosTau2|chr8 (3178143-3179436)
               

               
               9-1284, gnl|Hg17|chr4 (174618546-174619793)
               

               
               9-1284, gnl|Mm7|chr8 (55907945-55906664)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1284, gnl|bosTau2|chr8 (3178143-3179436)
               

               
               9-1284, gnl|Hg17|chr4 (174618546-174619793)
               

               
               9-1284, gnl|Mm7|chr8 (55907945-55906664)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               lin (0.728014)
               

               
               sag (0.548145)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               pty (0.285429)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               sag (0.548145)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               pty (0.285429)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	9-1284, gnl\|bosTau2\|chr8 (3178143-3179436)
	9-1284, gnl\|Hg17\|chr4 (174618546-174619793)
	9-1284, gnl\|Mm7\|chr8 (55907945-55906664)

	lin (0.728014)
	sag (0.548145)
	liv (0.438853)
	kid (0.389206)
	pty (0.285429)
	tes (0.207814)
	fbs (0.175346)
	duo (0.172801)
	cag (0.151194)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)