Non-Coding RNA Search

Ss1.1-rpliv0129_a13.5

Sequence:


               
               ACAATACTGAAACAGATAAGTGGGTCGCCAACTCCAAAGTCCGTGCTTTTCCAGTAACAA
GTTGTTTAATTTGTGTTGTCGATACTTGTGGAGCAAATGAAGAAACCCTTGAAACATGAA
AAAGGAGTGAACATCAAGACTCACTGGGGACAGAAAAATATGGCCACCAGTGCTTTGTTC
CAAGAGTTTGGCTACAAAGTTTTAGTTTGGTGTTTTGATTTTTTTTCAAGAAAGTTTCTG
GTAAAATAACAGCTCTATAAAATAGATTTTCTTTTATATGGATTTCCTTACTTAATTCAA
AGATCATATTTCTGTTGGCCACATAACCAAGAACATACCGAGCAAGAAAACTTGAAAAAT
TACAAGCACTTGGTGAAAATATGAATTCTCAAATGAATTTCACATTTGTAATTATAATTA
TGGCAGAATGGGATACTGACTCACCATTGAAGCAGTTTCATCTTAGCTCTAGATTCTATT
TTCGTACATTATAGAAGTGCTATGTAGTTAGGTCTATTTGTTTCTCTTCAGTCAAGAATT
AAGAAATGGTATGAATTGTAAGTCAAAGTTAGGCAATTCTGGTGGAACAGCTTAGTCTCA
CATAATTTTGCTTGTCTTCATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATACTGAAACAGATAAGTGGGTCGCCAACTCCAAAGTCCGTGCTTTTCCAGTAACAA
GTTGTTTAATTTGTGTTGTCGATACTTGTGGAGCAAATGAAGAAACCCTTGAAACATGAA
AAAGGAGTGAACATCAAGACTCACTGGGGACAGAAAAATATGGCCACCAGTGCTTTGTTC
CAAGAGTTTGGCTACAAAGTTTTAGTTTGGTGTTTTGATTTTTTTTCAAGAAAGTTTCTG
GTAAAATAACAGCTCTATAAAATAGATTTTCTTTTATATGGATTTCCTTACTTAATTCAA
AGATCATATTTCTGTTGGCCACATAACCAAGAACATACCGAGCAAGAAAACTTGAAAAAT
TACAAGCACTTGGTGAAAATATGAATTCTCAAATGAATTTCACATTTGTAATTATAATTA
TGGCAGAATGGGATACTGACTCACCATTGAAGCAGTTTCATCTTAGCTCTAGATTCTATT
TTCGTACATTATAGAAGTGCTATGTAGTTAGGTCTATTTGTTTCTCTTCAGTCAAGAATT
AAGAAATGGTATGAATTGTAAGTCAAAGTTAGGCAATTCTGGTGGAACAGCTTAGTCTCA
CATAATTTTGCTTGTCTTCATTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-201, - strand, RNAz p=0.58231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.58231

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-624, gnl|bosTau2|chr4 (11795051-11795660)
               

               
               3-624, gnl|Hg17|chr7 (22987041-22987641)
               

               
               3-624, gnl|Mm7|chr5 (23200107-23200683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr4 (11795051-11795660)
               

               
               3-624, gnl|Hg17|chr7 (22987041-22987641)
               

               
               3-624, gnl|Mm7|chr5 (23200107-23200683)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.236967)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

	3-624, gnl\|bosTau2\|chr4 (11795051-11795660)
	3-624, gnl\|Hg17\|chr7 (22987041-22987641)
	3-624, gnl\|Mm7\|chr5 (23200107-23200683)