Non-Coding RNA Search

Ss1.1-rpliv0129_b1.5.5

Sequence:


               
               AACTTACTGACAAAAGACTAATTACTTTCCCCTAAGATCAGGAACAAGACAATGATGTGT
GCTCTAGCTGCTTCTATTCAACATTTTACTGAACATTCTAGCCATGGCATTTAGAAAAGA
AAGAAAGAAAAGGCATTCAAATTCAAAAGGAAGAAGTAAAACTATCTCTATTTGCAGATG
ACATGATTTTTATATGAAAAATCATAAGGAATCCACTAAAATATAACTAATAAATGAGTT
CAGCAAGGTTGCAGGATATAAGATCAATATACAAAAGTTAATTTTATTTCTATACACTTG
GAATATGCAATCTAAAAGTAAAATTAAGAAAACAATTCCATTAATAATAGCTTCAGAAAG
AATAAAATGCTTAGGAATAAATTTGACAAGTAAATGAAAAAGTTACACTCCAAAAACTAC
AAAACACCATTGAAAACAGTTAAAAATTGAAGTAAGTATGAAGTCATCCAGTGTTCATGA
TCCAATGTTCATGAATCCAATGTTCATCAAATGTTAAATTTAACATTAGGATAGCAATAT
TCCCCCAATTATCTATAGATTCAATTAATCTTTATCAGAATTCCAGCAGGCTTCTTTGTA
CAAATTTACAAGCTCGTTCTAAAATGCATATGGAATTACAAGAGACCTAGAATAGCCAAA
ACATCTGTGAGAAAGAATAAAATAGAATAACTCAAACTACCTAACATCAAATCTTACAAC
AAAGCAAAATAATCAAGACATGTGGTTTGGGTACAAAGACCAAGAGAATTGTTCAGAAAT
AAACCCATACATTTATGGTAAATTGAATTTTGATAAGGACATAGATACAAGGATATTCTT
CAGTGCAGAAAAATAACGTTTTTCAGTGAATAGTACCTGGATAATGAAAAAGAATGAATT
TGGCTTCTTATCTCACACCATATACAAAAATTCACTCAAAATGGACCAAAGAACACAAAC
TATAAATTTCTTAGAAGAAACTGTAGGGGTAGATGATCATGACCTTGAATTTGGGAAAGG
GTTTTTATATAAAACACCAACGGACTAAGCAACAAAAGAAAAACTAGATAATTGCATTTC
ATCAATATAATTAACTTTTTTGTGCTATAAAGGCACCATCAAGAAAATGACAAGACAACT
CAAGAGACTAGGAGAAAATGTGTGCAAATCTGATGAGGGACCTACATCTGGAATATATTA
AGAACTCTTTCAACTCAATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTACTGACAAAAGACTAATTACTTTCCCCTAAGATCAGGAACAAGACAATGATGTGT
GCTCTAGCTGCTTCTATTCAACATTTTACTGAACATTCTAGCCATGGCATTTAGAAAAGA
AAGAAAGAAAAGGCATTCAAATTCAAAAGGAAGAAGTAAAACTATCTCTATTTGCAGATG
ACATGATTTTTATATGAAAAATCATAAGGAATCCACTAAAATATAACTAATAAATGAGTT
CAGCAAGGTTGCAGGATATAAGATCAATATACAAAAGTTAATTTTATTTCTATACACTTG
GAATATGCAATCTAAAAGTAAAATTAAGAAAACAATTCCATTAATAATAGCTTCAGAAAG
AATAAAATGCTTAGGAATAAATTTGACAAGTAAATGAAAAAGTTACACTCCAAAAACTAC
AAAACACCATTGAAAACAGTTAAAAATTGAAGTAAGTATGAAGTCATCCAGTGTTCATGA
TCCAATGTTCATGAATCCAATGTTCATCAAATGTTAAATTTAACATTAGGATAGCAATAT
TCCCCCAATTATCTATAGATTCAATTAATCTTTATCAGAATTCCAGCAGGCTTCTTTGTA
CAAATTTACAAGCTCGTTCTAAAATGCATATGGAATTACAAGAGACCTAGAATAGCCAAA
ACATCTGTGAGAAAGAATAAAATAGAATAACTCAAACTACCTAACATCAAATCTTACAAC
AAAGCAAAATAATCAAGACATGTGGTTTGGGTACAAAGACCAAGAGAATTGTTCAGAAAT
AAACCCATACATTTATGGTAAATTGAATTTTGATAAGGACATAGATACAAGGATATTCTT
CAGTGCAGAAAAATAACGTTTTTCAGTGAATAGTACCTGGATAATGAAAAAGAATGAATT
TGGCTTCTTATCTCACACCATATACAAAAATTCACTCAAAATGGACCAAAGAACACAAAC
TATAAATTTCTTAGAAGAAACTGTAGGGGTAGATGATCATGACCTTGAATTTGGGAAAGG
GTTTTTATATAAAACACCAACGGACTAAGCAACAAAAGAAAAACTAGATAATTGCATTTC
ATCAATATAATTAACTTTTTTGTGCTATAAAGGCACCATCAAGAAAATGACAAGACAACT
CAAGAGACTAGGAGAAAATGTGTGCAAATCTGATGAGGGACCTACATCTGGAATATATTA
AGAACTCTTTCAACTCAATAATAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-479, gnl|bosTau2|chr10 (57297362-57296900)
               

               
               1-479, gnl|hg17|chr14 (75206912-75208448)
               

               
               1-479, gnl|Hg17|chr14 (75208082-75207610)
               

               
               1-479, gnl|panTro1|chr15 (75250865-75252404)
               

               
               1-479, gnl|rheMac2|chr7 (138798692-138800207)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr10 (57297362-57296900)
               

               
               1-479, gnl|hg17|chr14 (75206912-75208448)
               

               
               1-479, gnl|Hg17|chr14 (75208082-75207610)
               

               
               1-479, gnl|panTro1|chr15 (75250865-75252404)
               

               
               1-479, gnl|rheMac2|chr7 (138798692-138800207)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               liv (2.63312)
               

               
               tra (0.738552)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (2.63312)
               

               
               tra (0.738552)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	1-479, gnl\|bosTau2\|chr10 (57297362-57296900)
	1-479, gnl\|hg17\|chr14 (75206912-75208448)
	1-479, gnl\|Hg17\|chr14 (75208082-75207610)
	1-479, gnl\|panTro1\|chr15 (75250865-75252404)
	1-479, gnl\|rheMac2\|chr7 (138798692-138800207)

	liv (2.63312)
	tra (0.738552)
	fco (0.314416)
	bfe (0.299715)
	tbr (0.154178)
	kid (0.129735)
	clu (0.119646)
	jca (0.11396)